AOP-Wiki

AOP ID and Title:

AOP 483: Deposition of Energy Leading to Learning and Memory Impairment
Short Title: Deposition of Energy Leading to Learning and Memory Impairment

Graphical Representation

Authors

Ahmad Sleiman1, Kathleen Miller2, Danicia Flores3, Jaqueline Kuan3, Kaitlyn Altwasser3, Benjamin Smith3, Hailey Adams4 Tatiana Kozbenko3, Robyn Hocking3, Carole Yauk5, Ruth Wilkins3, Vinita Chauhan3  

(1) Institut de Radioprotection et de Sûreté Nucléaire, St. Paul Lez Durance, Provence, France 

(2) Department of Health and Exercise Science, Morrison College Family of Health, University of St. Thomas, Saint Paul, Minnesota, USA

(3) Consumer and Clinical Radiation Protection Bureau, Environmental and Radiation Health Sciences Directorate, Health Canada, Ottawa, Ontario, Canada 

(4) Radiation Protection Bureau, Environmental and Radiation Health Sciences Directorate, Health Canada, Ottawa, Ontario, Canada

(5) Department of Biology, University of Ottawa, Ottawa, Ontario, Canada

Consultants 

Scott Wood1, Janice Huff2, Christelle-Adam Guillermin3, Nobuyuki Hamada4

(1) NASA Johnson Space Center, Houston, Texas, USA 

(2) NASA Langley Research Center, Hampton, Virginia, USA 

(3) Institut de Radioprotection et de Sûreté Nucléaire, St. Paul Lez Durance, Provence, France 

(4) Biology and Environmental Chemistry Division, Sustainable System Research Laboratory, Central Research Institute of Electric Power Industry (CRIEPI), Chiba, Japan

 

Status

Author status OECD status OECD project SAAOP status
Open for citation & comment Under Review 1.89

Abstract

The central nervous system (CNS) is the main processing center of the body and is comprised of the brain and spinal cord. Some diseases of the CNS, including neurodegenerative diseases such as cognitive decline and dementia, are associated with advancing age. However, unwanted exposure to stressors may promote or accelerate these disorders. For example, ionizing radiation is an exposure which can disrupt cellular homeostasis in the brain. Herein, an adverse outcome pathway (AOP) is described from the molecular initiating event (MIE) of deposition of energy to the adverse outcome (AO) of learning and memory impairment. This AOP uses well-understood mechanistic events that encompass oxidative stress, DNA damage, tissue resident cell activation, altered stress response signaling, neuroinflammation, and their interactions, leading to eventual abnormal neural remodeling. The empirical evidence to support this AOP is primarily derived from studies that utilize ionizing radiation stressors relevant to space travel and radiotherapy treatments. Following deposition of energy (MIE, KE#1686), the adjacent key events are oxidative stress (KE#1392), tissue resident cell activation (KE#1492) and increased DNA strand breaks (KE#1635). Uncontrolled radical production within the cell has an adjacent connection with increased DNA strand breaks (KE#1635), altered stress response signaling (KE#2244) and tissue resident cell activation (KE#1492). Tissue resident cell activation has an adjacent connection to increased proinflammatory mediators (KE#1493). Prolonged neuroinflammation and altered stress response signaling have adjacent connections with abnormal neural remodeling (KE#2098) and subsequently learning and memory impairment (AO, KE#341). The AOP also includes multiple non-adjacent connections between key events. The overall weight of evidence for this AOP is moderate. Despite multiple knowledge gaps that are present, the evidence demonstrates a high-level of biological plausibility. The quantitative understanding is low as there is high uncertainty in the quantitative predictions between the KEs. This AOP has wide applicability and is particularly relevant to exposures from long-duration space flight and medical exposures using radiation therapy.  

Background

Understanding the impact of ionizing radiation on CNS is essential as there are many possibilities for humans to be exposed to ionizing radiation including from medical procedures, accidental or wartime exposures, and occupational exposures, such as industrial radiographers or astronaut crewmembers. Various studies have reported cognitive deficits after high-doses of radiation exposure from radiotherapy, though there is a reported individual variability in human cohorts (Greene-Schloesser et al., 2012; Katsura et al., 2021; Turnquist et al., 2020). In preclinical animal models, studies suggest that even low-to-moderate doses of ionizing radiation from heavy ions can cause structural and functional impairments to the CNS including reductions in neurogenesis, changes in dendritic properties, activation of glial cells, leading to neural remodeling (Cekanaviciute et al., 2018; Kiffer et al., 2019b). However, how key changes in structural and functional properties of the CNS from ionizing radiation exposure are related to changes in cognitive function have yet to be delineated. Furthermore, preclinical studies also suggest that ionizing radiation may impact two major cognitive processes: learning and memory. Learning is the ability to create new associative or non-associative relationships and memory is the ability to recall sensory, short-term or long-term information (Desai et al., 2022, Kiffer et al., 2019b). Both learning and memory involve multiple brain areas including the hippocampal region, as well as the amygdala, the prefrontal cortex and the basal ganglia (Cucinotta et al., 2014; Desai et al., 2022; NCRP Commentary, 2016). The link between learning and memory is complexly intertwined, as their processes share mechanisms such as changes in neuronal plasticity, alternations in neurotransmitter release and reuptake and alterations in gray and white matter structure (Toricelli et al., 2021). Thus far, direct pathways linking ionizing radiation to key cellular and molecular events leading to an AO of impaired learning and memory have not been established.   

This AOP can serve as a foundational pathway for expansion to other cognitive disorders and CNS diseases from an MIE of deposition of energy. The strength of this AOP is in its rigorous and systematic collection and evaluation of evidence with moderate to high levels of qualitative evidence supporting the KERs.  

Summary of the AOP

Events

Molecular Initiating Events (MIE), Key Events (KE), Adverse Outcomes (AO)

Sequence Type Event ID Title Short name
MIE 1686 Deposition of Energy Energy Deposition
KE 1392 Oxidative Stress Oxidative Stress
KE 2244 Altered Stress Response Signaling Altered Stress Response Signaling
KE 1492 Tissue resident cell activation Tissue resident cell activation
KE 2097 Increase, Pro-Inflammatory Mediators Increase, Pro-Inflammatory Mediators
KE 2098 Increase, Abnormal Neural Remodeling Abnormal Neural Remodeling
KE 1635 Increase, DNA strand breaks Increase, DNA strand breaks
AO 341 Impairment, Learning and memory Impairment, Learning and memory

Key Event Relationships

Upstream Event Relationship Type Downstream Event Evidence Quantitative Understanding
Deposition of Energy adjacent Oxidative Stress High Moderate
Deposition of Energy adjacent Tissue resident cell activation Moderate Moderate
Oxidative Stress adjacent Altered Stress Response Signaling High Low
Oxidative Stress adjacent Tissue resident cell activation Moderate Low
Tissue resident cell activation adjacent Increase, Pro-Inflammatory Mediators Moderate Low
Increase, Pro-Inflammatory Mediators adjacent Increase, Abnormal Neural Remodeling Moderate Low
Increase, Abnormal Neural Remodeling adjacent Impairment, Learning and memory Moderate Low
Altered Stress Response Signaling adjacent Increase, Abnormal Neural Remodeling Moderate Low
Increase, DNA strand breaks adjacent Increase, Abnormal Neural Remodeling Moderate Low
Oxidative Stress adjacent Increase, DNA strand breaks Moderate Moderate
Deposition of Energy adjacent Increase, DNA strand breaks High High
Increase, DNA strand breaks adjacent Altered Stress Response Signaling Moderate Low
Deposition of Energy non-adjacent Increase, Abnormal Neural Remodeling Moderate Low
Deposition of Energy non-adjacent Impairment, Learning and memory Moderate Low
Increase, Pro-Inflammatory Mediators non-adjacent Impairment, Learning and memory Moderate Low

Stressors

Name Evidence
Ionizing Radiation

Overall Assessment of the AOP

This AOP was derived from data that investigates the CNS of humans, animals and cellular models following predominantly exposure to ionizing radiation. The AOP is qualitative in nature and not intended to be specific to any particular exposure parameter. The exposure parameters informing the AOP include doses of moderate-high (>1 Gy) and both high and low-LET radiation qualities.  However, the extent to which cognitive deficits exist at low-to-moderate ionizing radiation doses (0.1 Gy - 1 Gy) across all the KEs in the AOP remains incompletely understood as limited empirical evidence was retrieved to support this understanding. Since KERs are independent units from the rest of the AOP and can support multiple AOs,  some macromolecular KERs may include studies from cell types (e.g., lens cells) and stressors (e.g.,  UV) not relevant to the AO.    

The goal of this AOP is to identify the qualitative biological perturbations of the MIE of deposition of energy through the molecular, cellular and tissue-level KEs that lead to abnormal neural remodeling and the AO of impaired learning and memory. While neural remodeling is a natural process that allows the brain to continue to adapt, long-term exposure to stressors such as the space environment (e.g., microgravity and space radiation) may lead to chronic inflammation and possible changes in structure and function of neural cells ultimately resulting in cognitive deficits. The progression of KEs along the proposed hypothetical AOP is driven by persistent oxidative stress and chronic release of pro-inflammatory markers, creating an environment of neuroinflammation. The KEs chosen for this AOP had adequate empirical evidence, however, other KEs may be added later to incorporate new mechanisms and AOs into its broader network. Since the AOP is stressor agnostic, this pathway is applicable to impaired learning and memory in the context of multiple stressors of deposition of energy including ionizing radiation exposure from space travel and radiotherapy. 

 

Biological Plausibility  

The overall biological plausibility in this AOP is high. The KERs in the AOP have either moderate or high evidence for the mechanistic understanding of the relationships between the upstream and downstream KEs. The KEs are well-studied, and an understanding of the structural and functional linkages are well-established. 

This AOP is initiated with deposition of energy. Deposition of energy can damage DNA via direct mechanisms, by which the electrons ionize DNA molecules themselves, or via indirect mechanisms, by which the ionization of water produces hydroxyl radicals that can damage DNA bases causing DNA strand breaks (Nikjoo et al., 2016; Wilkinson et al., 2023) or directly upregulating enzymes involved in reactive oxygen and nitrogen species (RONS) production (i.e., catalase) (de Jager, Cockrell and Du Plessis, 2017). Both reactive oxygen species (ROS) as well as reactive nitrogen species (RNS) (Ahmadi et al., 2022; Karimi et al., 2017; Slezak et al., 2015; Tahimic & Globus, 2017; Wang et al., 2019a) may be produced after deposition of energy. If RONS cannot be eliminated quickly and efficiently by the cell’s defense system, oxidative stress ensues (Balasubramanian, 2000; Ganea & Harding, 2006; Karimi et al., 2017). Within the brain, oxidative stress can lead to the activation of microglial cells (Fishman et al., 2009; Schnegg et al., 2012; Zhang et al., 2017) and astrocytes (Daverey & Agrawal, 2016; Wang et al., 2017). These cells then release pro-inflammatory mediators and initiate antioxidant defenses (Lee, Cha & Lee, 2021; Simpson & Oliver, 2020). However, if the antioxidant capacity is overwhelmed, chronic inflammation may result. 

Oxidative stress can also lead to altered stress response signaling. Directly, ROS causes oxidation of amino acid residues resulting in conformational changes, protein expansion, and protein degradation. This can cause changes in the activity and level of signaling proteins (Ping et al., 2020; Li et al., 2013). Oxidation of key functional amino acids can also alter the activity of signaling proteins, resulting in downstream alterations in signaling pathways (Ping et al., 2020; Schmidt-Ullrich et al., 2000; Valerie et al., 2007; Lehtinen & Bonni, 2006; Ramalingam & Kim, 2012). DNA strand breaks from oxidative damage can activate DNA damage response signaling and modify the expression of other signaling proteins (Ping et al., 2020; Nagane et al., 2021; Schmidt-Ullrich et al., 2000; Valerie et al., 2007). 

Both increased pro-inflammatory mediators and altered stress response signaling can lead to abnormal neural remodeling. Various pro-inflammatory cytokines can affect neural activity/function, the most common being IL-1β, TNF-α, IL-6 and IFN-γ. During an inflammatory response, these cytokines act on different receptors to initiate several signaling pathways to induce neuronal degeneration, apoptosis or to propagate further pro-inflammatory responses (Mousa & Bakhiet, 2013; Prieto & Cotman, 2018). These signaling pathways include, but are not limited to PI3K/Akt pathways, MAPK pathways, senescence signaling, and apoptosis pathways. The PI3K/Akt and MAPK pathways are involved in many processes in neurons, including cell survival, morphology, proliferation, differentiation, and synaptic activity (Davis and Laroche, 2006; Falcicchia et al., 2020; Long et al., 2021; Mazzucchelli and Brambilla, 2000; Mielke and Herdegen, 2000; Nebreda and Porras, 2000; Rai et al., 2019; Rodgers and Theibert, 2002; Sherrin, Blank, and Todorovic, 2011). The apoptosis pathway decreases cell number, while senescence signaling can influence the regenerative potential of the cell and therefore, neurogenesis (Betlazar et al., 2016; McHugh and Gil, 2018; Mielke and Herdegen, 2000). Disruptions to components of these pathways will lead to abnormal neural remodeling, which includes alterations in both morphological properties and functional properties of the neurons (Betlazar et al., 2016; Davis and Laroche, 2006; Mazzucchelli and Brambilla, 2000; Nebreda and Porras, 2000). However, the biological changes that follow perturbation of these pathways is not understood in every context and cell type, making the biological plausibility for this relationship moderate (Nebreda and Porras, 2000). Decreased morphological properties of neurons, including reductions in dendritic complexities and spine densities, as well as altered functional properties of neurons including altered synaptic signaling and neurogenesis, has been associated with learning and memory impairment (Bálentová & Adamkov, 2020; Hladik & Tapio, 2016; Monje & Palmer, 2003; Romanella et al., 2020; Tomé et al., 2015). 

 

Empirical Support (Temporal, Dose, and Incidence Concordance) 

This AOP demonstrates moderate empirical evidence to support the modified Bradford Hill criteria. Overall, many studies demonstrated that upstream KEs occurred at lower or the same doses and at earlier or the same times as downstream KEs. There were some inconsistencies where the KEs were only measured at one dose or time. The evidence collected was gathered from various studies using in vitro and in vivo rat, mice, rabbit, squirrel, bovine and human models. Various stressors were applied, including UV, UVB, UVA, gamma ray, X-ray, protons, alpha particle, neutron, and heavy ion irradiation. 

Regarding time concordance, deposition of energy occurs immediately following irradiation, and downstream events will always occur at a later time-point. DNA damage occurs within nanoseconds of deposition of energy with DNA strand breaks measured from seconds to minutes later and altered signaling measured minutes to days later (Acharya et al., 2010; Antonelli et al., 2015; Mosconi et al., 2011; Rogakou et al., 1999; Rothkamm and Lo, 2003; Sabirzhanov et al., 2020; Zhang et al., 2017). Rapid increases in ROS (Limoli et al., 2004; Giedzinski et al., 2005; Suman et al., 2013) and activation of microglia and astrocytes have been observed within hours of irradiation and can persist for 12 months (Kyrkanides et al., 1999; Hwang et al., 2006; Suman et al., 2013). For tissue resident cell activation and increase in pro-inflammatory mediators, studies generally show that these events occur at a similar time frame (Parihar et al., 2018; Liu et al., 2010; Dong et al., 2015; Lee et al., 2010; Zhou et al., 2017). The alteration of signaling pathways is a molecular-level KE like oxidative stress, and both can occur concurrently (Xu et al., 2019), although increased ROS levels can be initiated significantly before altered stress response signaling (Suman et al., 2013). Abnormal neural remodeling has been observed at various time points from hours to months after exposure to a stressor, and its upstream KEs (altered signaling and increased pro-inflammatory mediators) generally appear earlier (Kanzawa et al., 2006; Limoli et al., 2004; Pius-Sadowska et al., 2016) or at similar times, respectively (Zonis et al., 2015; Wong et al., 2004, Green et al., 2012; Ryan et al., 2013; Vallieres et al., 2002). In response to irradiation, impaired learning and memory is typically observed at similar time-points as markers of  abnormal neural remodeling due to the timing of measurements (Raber et al., 2004; Parihar et al., 2016; Madsen et al., 2003; Winocur et al., 2006; Rola et al., 2004). 

Regarding dose concordance, multiple studies also demonstrate that the upstream KEs occur at lower or the same doses as downstream KEs as energy is deposited immediately at any dose of radiation. Some studies report a linear-dose-dependent increases in DNA strand breaks for a large range of doses (Antonelli et al., 2015; Hamada et al, 2006; Rübe et al., 2008). In addition, neural precursor cells irradiated with protons at 1, 2, 5 and 10 Gy showed a dose-dependent increase in ROS levels (Giedzinski et al., 2005). In another study, activation of microglia and astrocytes were seen at doses as low as 5 cGy that persisted to 30 cGy (Parihar et al., 2018). However, dose concordance is not consistently observed across studies, which can be attributed to differences in experimental design. Some studies also only measured the KEs at one dose, which presented further inconsistencies. 

Few studies showed incidence concordance where the upstream KE demonstrated a greater change than the downstream KE following a stressor. Not all KERs displayed an incident-concordant relationship, but for those that did, only a small proportion of the empirical evidence supported this relationship. For example, mice exposed to 2 Gy of gamma irradiation showed increases of pro- apoptotic markers p53 and BAX by 8.4- and 2.3-fold, respectively. A 0.6-fold decrease in Bcl-2 (anti-apoptotic marker) was also observed, and gamma rays cause a decrease in cortical thickness by 0.9-fold (Suman et al., 2013). 

Uncertainties, Inconsistencies, and Data Gaps 

There are a few inconsistencies in this AOP. Some studies show sex-specific changes in the KEs. For example, two studies reported that tissue resident cell activation was not affected in female mice after 0.3 and 0.5 Gy of radiation (Krukowski et al., 2018a; Parihar et al., 2020) while a separate study showed that only female mice had activated cells after 2 Gy (Raber et al., 2019). Another study reported a greater radiation-induced reduction in neurogenesis in male mice compared with female mice (Kalm et al., 2013). More research is necessary to identify if these results are sex-specific or due to other modulating factors. 

There have been some inconsistencies reported in the KER Deposition of Energy (KE#1686) to Increase DNA Strand Breaks (KE#1635). For example, dose-rates and radiation quality may influence dose-response relationships (Brooks et al., 2016, Sutherland et al., 2000; Nikjoo et al., 2001; Jorge et al., 2012). More research is necessary to understand the impact low-doses of ionizing radiation exposure on DNA damage as some studies report low-dose exposures may invoke protection against spontaneous genomic damage (as reviewed by ICRP (2007) and UNSCEAR (2008)). 

Anatomical location of change in the KEs may impact its response. For example, in response to ionizing radiation, changes occurred in hippocampal dendritic spines CA1 subregion of hippocampus but not in the dorsal dentate gyrus (Kiffer et al., 2019a). 

Changes in KEs and the AO may be dose and stressor specific when assessed using animal models. For example, cue feared conditioning, a measure of learning and memory had different responses in mice at 0.2 Gy vs. 1 Gy of 28Si exposure (Whoolery et al., 2017). Also in mice, object memory was impaired after 0.1 or 0.25 Gy 16O exposure and social novelty learning was impaired after 0.25 Gy 16O exposure, but neither dose impaired short-term spatial memory (Kiffer et al., 2019a). 

Changes in signaling pathways may provide inconsistent outcomes related to abnormal neural remodeling. For example, the p38 pathway is involved in many, often opposing, biological processes (Nebreda and Porras, 2000). Furthermore, the MAPK pathways can exhibit varied responses after exposure to oxidative stress (Azimzadeh et al., 2015). 

Many studies do not report direct measures of oxidative stress. As free radicals are quickly scavenged, the quantitative understanding of this relationship can be inconsistent, due to varied response of antioxidant enzymes across experimental conditions and time measurements. This has led to some inconsistencies within the KERs. For example, in contrast to other studies demonstrating an increase in oxidative stress following deposition of energy, neutron radiation decreased malondialdehyde, a product of oxidative stress (Chen et al., 2021). 

The scope of several KEs in this AOP is broad and this reflects a level of uncertainty in exact endpoints that specifically link to the AO, therefore several  KEs (e.g. abnormal neural remodeling and signaling pathways) are defined by multiple structural and functional measurements. 

Inflammatory markers exhibit a dual role, with the capacity for both anti-inflammatory and pro-inflammatory actions. Variables such as concentration, timing, and the specific microenvironment play pivotal roles in determining whether a mediator acts in a pro-inflammatory or anti-inflammatory manner (Lawrence & Gilroy, 2007; Nathan & Ding, 2010). 

The use of different assays to assess the KEs may lead to variations in the quantitative understanding of observations across studies. 

Limited data is available to support an understanding of oxidative stress and pro-inflammatory mediators at low doses < 0.1 Gy. 

Finally, many of the KERs do not include studies in humans. More research could be needed to observe these relationships in human models. 

There were multiple challenges present in the development of this AOP which identified numerous gaps in the data. The majority of the evidence for this AOP is extracted from preclinical animal and cellular models. Therefore, the low availability of human studies presents a challenge as translation of the animal and cellular models to humans is difficult due to differences in physiology, methods and measurements. In addition, although both age and sex are listed as modulating factors, there is more research necessary to elucidate the interaction between age and sex on the KEs, particularly how these factors may modulate the causal connectivity of the relationships and the AO. Direct comparisons between studies were also difficult due to differences in model, radiation quality, dose, dose rate and endpoint which led to some inconsistencies. Many studies reported limited dose ranges or time-points and often measured a single KE, limiting evidence for direct KERs. The current AOP has low quantitative evidence supporting the KERs, however, this AOP can be expanded with experiments that further exemplify the level of dose- and time- concordance across multiple endpoints. This will improve the quantitative understanding of the relationships which can then support the development of risk models and tools for mitigating risk. 

Domain of Applicability

Life Stage Applicability
Life Stage Evidence
All life stages High
Taxonomic Applicability
Term Scientific Term Evidence Links
human Homo sapiens Moderate NCBI
mouse Mus musculus High NCBI
rat Rattus norvegicus High NCBI
rabbit Oryctolagus cuniculus Low NCBI
dog Canis lupus familiaris Low NCBI
pigs Sus scrofa Low NCBI
cow Bos taurus Low NCBI
Sex Applicability
Sex Evidence
Unspecific High
Male Moderate
Female Low

This AOP is relevant to vertebrates, such as humans, mice, rats. The taxonomic evidence supporting the AOP comes from the use of human (Homo sapiens), human-derived cell line, beagle dog (Canis lupus familiaris), rat (Rattus orvegicus), and mouse (Mus musculus) studies. Across all species, most available data was derived from adult and adolescent models with a moderate to high level of evidence compared to less available data from preadolescent models. Many of the KEs demonstrated moderate to high evidence for males and low evidence for females. In multiple KEs, sex was unspecified. 

 

Essentiality of the Key Events

Overall, the KEs in this AOP demonstrate moderate essentiality. Essentiality is demonstrated when upstream KEs are blocked or inhibited eliciting a change in the downstream KE. 

Essentiality of the Deposition of Energy (MIE, KE#1686)  

  •  Deposition of energy is difficult to test for essentiality as deposition of energy is a physical stressor and cannot be blocked/decreased using chemicals. Since deposited energy initiates events immediately, the removal of deposited energy, a physical stressor, also supports the essentiality of the key event. Studies that do not deposit energy are observed to have no downstream effects. 

Essentiality of Oxidative Stress (KE#1392)  

  • The effect of antioxidants on altered stress response signaling (KE#2244) 

  • Antioxidants including Melandrii Herba extract, N-acetyl-L-cysteine (NAC), gallocatechin gallate/epigallocatechin-3-gallate, Cornus officinalis (CC) and fermented CC (FCC), L-165041, fucoxanthin, and edaravone were shown to decrease phosphorylation of MAPKs such as ERK1/2, JNK1/2 and p38 after exposure to radiation, H2O2 or lipopolysaccharide (LPS) (Lee et al., 2017; Deng et al., 2012; Park et al., 2021; Tian et al., 2020; Schnegg et al., 2012; Zhao et al., 2017; Zhao et al., 2013; El-Missiry et al., 2018). 

  • The effects of antioxidants on tissue resident cell activation (KE#1492) 

  • Antioxidants including Kukoamine A (KuA) and curcumin were found to reduce levels of microglia and astrocyte activation (Zhang et al. 2017; Daverey & Agrawal, 2016; Wang et al., 2017). 

  • The effect of knocking out a ROS-producing enzyme 

  •  A knockout model of mitochondrial superoxide dismutase 2 (SOD2) resulted in an increase in reactivity of microglial cells (Fishman et. al 2009). 

Essentiality of Increase, DNA Strand Breaks (KE#1635)  

  • The effects of blocking DNA strand breaks on altered stress response signaling (KE#2244) 

  • Treatment with mesenchymal stem cell-conditioned medium (MSC-CM) reduced γ-H2AX, decreased the levels of p53, Bax, cleaved caspase 3 and increased the levels of Bcl-2 in HT22 cells irradiated with 10 Gy of X-rays (Huang et al., 2021). 

  • The inhibition of microRNA (miR)-711 decreased levels of DNA damage markers, p-ATM, p-ATR and γ-H2AX, and decreased signaling molecules including p-p53, p21 and cleaved caspase 3 (Sabirzhanov et al., 2020). 

  • The effects of blocking DNA strand breaks on abnormal neural remodeling (KE#2098) 

  • Treatment of HT22 hippocampal neuronal cells with minocycline inhibited the expression of γ-H2AX and the p-ATM/ATM ratio as well as reduced apoptosis following X-ray exposure (Zhang et al., 2017). Similarly, MSC-CM reduced the expression of γ- H2AX and reduced apoptosis, reversing the changes induced by X-ray radiation (Huang et al., 2021). 

  • Lithium chloride was also shown to reduce γ-H2AX levels and increase proliferation in neural stem cells irradiated with 60Co gamma rays (Zanni et al., 2015). 

Essentiality of Altered Stress Response Signaling (KE#2244)  

  • The effects of modulating cell signaling on abnormal neural remodeling (KE#2098) 

  • Knockout models of key molecules in the MAPK pathways and apoptotic pathway reduced apoptotic activity and restored neuron numbers induced by simulated ischemic stroke or radiation (Tian et al., 2020; Chow, Li and Wong, 2000; Limoli et al., 2004). 

  •  Inhibition of key signaling molecules involved in the MAPK pathways and the PI3K/Akt pathway restored neural stem cell numbers, neuronal differentiation, and neuronal structure induced by radiation (Eom et al., 2016; Kanzawa et al., 2006; Zhang et al. 2018) 

Essentiality of Tissue Resident Cell Activation (KE#1492) 

  • The effects of modulating cell activation on pro-inflammatory mediators (KE#1493) 

  • Drugs including tamoxifen, retinoic acid, N-acetyl-L-cysteine (NAC), SP 600125 (SP), a specific c-jun kinase inhibitor, and NS- 398, a microglial activator attenuated the activation of tissue-resident cells and consequently reduced the levels of pro- inflammatory mediators (Liu et al., 2010; van Neerven et al., 2010; Komatsu et al., 2017; Ramanan, 2008; Kyrkanides et al., 2002). 

 

Essentiality of Pro-Inflammatory Mediators (KE#1493) 

  • The effects of modulating pro-inflammatory mediators on abnormal neural remodeling (KE#2098) 

  • Treatments including MW-151, a selective inhibitor of pro-inflammatory cytokine production, KuA, and histamine restored neurogenic signaling, hippocampal apoptosis, and neuronal complexity (Jenrow et al., 2013; Zhang et al., 2017; Saraiva et al., 2019). 

  • Multiple studies use cytokine receptor antagonists or knock-out key receptors to block the effects of IL-1β, TNF-α, and CCL2, which preserves neuron survival (Green et al., 2012; Ryan et al., 2013; Wu et al., 2012; Chen and Palmer, 2013). 

  • Complement component 3 (C3) knockout models also caused increased synaptic number, reduced neuron loss and ameliorated synaptic morphology impairment (Shi et al., 2017). 

  • The effects of modulating pro-inflammatory mediators on learning and memory impairment (AO, KE#341) 

  •  Anti-inflammatory drugs or hormones including MW-151, a selective inhibitor of pro-inflammatory cytokine production, lidocaine, an anesthetic with anti-inflammatory properties, ethyl-eicosapentaenoate (E-EPA) and 1-[(4-nitrophenyl)sulfonyl]-4- phenylpiperazine (NSPP), both of which are anti-inflammatory drugs and α-Melanocyte stimulating hormone (α-MSH), which antagonizes the effects of pro-inflammatory cytokines, have rescued the impairments seen in learning and memory (Bhat et al., 2020; Gonzalez et al., 2009; Jenrow et al., 2013; Taepavarapruk & Song, 2010; Tan et al., 2014). 

Essentiality of Abnormal Neural Remodeling (KE#2098)  

No identified studies describe essentiality of abnormal neural remodeling as it cannot be blocked / decreased using chemicals 

Weight of Evidence Summary

Biological Plausibility 

1. Support for Biological Plausibility of KERs 

Defining Question 

High (Strong) 

Moderate 

Low (Weak) 

Is there a mechanistic relationship between KEup and KEdown consistent with established biological knowledge? 

Extensive understanding of the KER based on extensive previous documentation and broad acceptance; Established mechanistic basis 

KER is plausible based on analogy to accepted biological relationships, but scientific understanding is not completely established 

There is empirical support for statistical association between KEs, but the structural or functional relationship between them is not understood 

Deposition of Energy (MIE, KE#1686) → Oxidative Stress (KE#1392) 

High 

There is high evidence surrounding the biological plausibility of deposition of energy leading to increased oxidative stress. When energy reaches a cell, it reacts with water and organic materials to produce ROS. Oxidative stress occurs when antioxidant systems cannot eliminate ROS.  

Deposition of Energy (MIE, KE#1686) → Tissue Resident Cell Activation (KE#1492) 

High 

There is high evidence surrounding biological plausibility of deposition of energy leading to tissue resident cell activation. It is well understood that deposition of radiation energy leads to a recruitment of immune cells within the local tissue which can induce an immune and inflammatory response, characterized by the recruitment and activation of local macrophages in the brain. 

Oxidative Stress (KE#1392) → Increase, DNA Strand Breaks (KE#1635) 

High 

There is high evidence surrounding biological plausibility of oxidative stress leading to DNA strand breaks. Oxidative stress can induce DNA damage by oxidizing or deleting DNA bases leading to strand breaks.  

Increase, DNA Strand Breaks (KE#1635) → Altered Stress Response Signaling (KE#2244) 

High 

There is high evidence surrounding biological plausibility of increased DNA strand breaks to altered stress response signaling. DNA strand breaks induce DNA damage responses which result in the induction of various stress response signaling. 

Oxidative Stress (KE#1392) → Tissue Resident Cell Activation (KE#1492) 

Moderate 

There is moderate evidence surrounding biological plausibility of increased oxidative stress leading to tissue resident cell activation. Increases in oxidative stress elicits activation of microglial cells and astrocytes in the brain. Activated microglia and astrocytes release pro-inflammatory mediators and promote antioxidant defenses. Feedforward and feedback loops of RONS and inflammatory pathways make the direct link between oxidative stress and microglial cell or astrocyte activation difficult to discern. 

Oxidative Stress (KE#1392) → Altered Stress Response Signaling (KE#2244) 

High 

There is high evidence surrounding the biological plausibility of increased oxidative stress to altered stress response signaling. Oxidative stress can lead to altered stress response signaling both directly and indirectly. Directly, oxidative stress conditions can lead to oxidation of amino acid residues. This causes conformational changes, protein expansion, and protein degradation, leading to changes in the activity and level of signaling proteins that result in downstream alterations in signaling pathways. Indirectly, oxidative stress can damage DNA causing changes in the expression of signaling proteins as well as the activation of DNA damage response signaling. 

Altered Stress Response  Signaling  (KE#2244) → Increase, Abnormal Neural Remodeling (KE#2098) 

Moderate 

There is moderate evidence surrounding biological plausibility of altered stress response signaling to abnormal neural remodeling. Abnormal neural remodeling is controlled by signaling pathways in the brain, including PI3K/Akt pathway, MAPK pathways, senescence pathways, and apoptosis pathways. The PI3K/Akt and MAPK pathways are involved in many processes in neurons, including cell survival, morphology, proliferation, differentiation, and synaptic activity.  The apoptosis pathway influences cell numbers, while the senescence pathway can influence neurogenesis. Disruptions to components of these pathways will lead to abnormal neural remodeling in a relationship that is structurally well-understood.  However, the biological changes that follow perturbation of these pathways is not understood in every context and cell type.  

Tissue Resident Cell Activation (KE#1492) → Increase, Pro-inflammatory Mediators (KE#2097)  

High 

There is high evidence surrounding biological plausibility of tissue resident activation to increase in pro-inflammatory mediators. In the brain, activated astrocytes and microglia undergo gliosis and proliferate, releasing pro-inflammatory mediators and production of cytokines. This response is normal after exposure to pathogens, but prolonged activation can prolong the inflammatory response. Cytokines and chemokines can also increase the permeability of the blood-brain barrier, further increasing pro-inflammatory mediator levels.   

Increase, Pro-inflammatory Mediators (KE#2097) → Increase, Abnormal Neural Remodeling (KE#2098) 

Moderate 

There is moderate evidence surrounding the biological plausibility of increased pro-inflammatory mediators to abnormal neural remodeling. There are various pro-inflammatory cytokines that can affect neuronal integrity an inflammatory response and these cytokines act on different receptors to initiate several signaling pathways to induce neuronal degeneration, apoptosis or to propagate pro-inflammatory responses. However, the exact mechanistic relationship remains to be elucidated due to the complexity of cytokine cascading events. 

Increase, Abnormal Neural Remodeling (KE#2098) → Impairment, Learning and Memory (AO, KE#341)   

Moderate 

There is moderate evidence surrounding biological plausibility of abnormal neural remodeling leading to impaired learning and memory. Evidence of abnormal neural remodeling, such as reductions in spine density, reduced adult neurogenesis and impaired neuronal networks are associated with cognitive impairments, as evident from studies in multiple different species 

Deposition of Energy (MIE, KE# 1686) →  Increase, Abnormal Neural Remodeling (KE#2098) 

Moderate 

There is moderate evidence surrounding biological plausibility of deposition of energy to abnormal neural remodeling. Irradiation induces oxidative stress and neuroinflammation, which alter neuronal integrity. Many reviews examine the radiation-induced neural damage and identify correlation with oxidative stress and neuroinflammatory mechanisms.  

Deposition of Energy (MIE, KE#1686) → Impairment, Learning and Memory (AO, KE#341)   

High 

There is high evidence surrounding biological plausibility of deposition of energy to impaired learning and memory. Energy deposition in the form of ionizing radiation can result in behavioral changes and impairments in learning and memory. Under normal conditions, diminished cognitive functions is influenced by aging or can occur if there is a predisposition to neurodegenerative diseases such as Alzheimer’s, however, exposure to ionizing radiation may accelerate risk for age-related cognitive decline. 

Deposition of Energy (MIE, KE#1686) → Increase, DNA Strand Breaks (KE#1635) 

High 

There is high evidence surrounding biological plausibility of deposition of energy to DNA strand breaks. Direct DNA damage can occur after deposition of energy by direct oxidation of the DNA. Indirect DNA damage from deposition of energy can also occur via generation of ROS that can subsequently oxidize and damage DNA. 

 

Increase, DNA Strand Breaks (KE#1635) → Increase, Abnormal Neural Remodeling (KE#2098) 

Moderate 

There is moderate evidence surrounding biological plausibility of increased DNA strand breaks to increase, abnormal neural remodeling. DNA strand breaks may initiate apoptotic signaling and impact synaptic activity, neural plasticity, differentiation, and proliferation. 

Pro-inflammatory Mediators (KE#2097) → Impairment, Learning and Memory (AO, KE#341)   

Moderate 

There is moderate support for the biological plausibility of the key event relationship between pro-inflammatory mediators to impaired learning and memory. In a neuroinflammatory response, pro-inflammatory mediators including cytokines induce physiological and/or structural changes within the brain that can ultimately lead to impaired learning and memory. The exact mechanistic relationship is still unclear due to the complexity of cytokine cascading events. 

 

Empirical Support 

Review of the Empirical support for each KER 

Defining Question 

High (Strong) 

Moderate 

Low (Weak) 

Does KEupstream occur at lower doses and earlier time points than KEdownstream; is the incidence or frequency of KEupstream greater than that for KEdownstream for the same dose of tested stressor?    

There is a dependent change in both events following exposure to a wide range of specific stressors (extensive evidence for temporal, dose-response and incidence concordance) and no or few data gaps or conflicting data. 

There is demonstrated dependent change in both events following exposure to a small number of specific stressors and some evidence inconsistent with the expected pattern that can be explained by factors such as experimental design, technical considerations, differences among laboratories, etc 

There are limited or no studies reporting dependent change in both events following exposure to a specific stressor (i.e., endpoints never measured in the same study or not at all), and/or lacking evidence of temporal or dose-response concordance, or identification of significant inconsistencies in empirical support across taxa and species that don’t align with the expected pattern for the hypothesised AOP 

Deposition of Energy (MIE, KE#1686) → Oxidative Stress (KE#1392) 

High 

 Ample evidence from in vitro and in vivo rat, mice, rabbit, squirrel, bovine and human models support time and dose response effects related to deposition of energy from various ionizing radiation sources leading to an increase in oxidative stress. 

Deposition of Energy (MIE, KE#1686) → Tissue Resident Cell Activation (KE#1492) 

Moderate 

 With increasing dose of ionizing radiation, there are increasing amounts of resident tissue activation in both astrocytes and microglial cells. Multiple studies show dose-response and time-response effects with both high and low dose studies, as well as time ranges from hours to months, though additional studies at low-doses would improve empirical support.  

Oxidative Stress (KE#1392) → Increase, DNA Strand Breaks (KE#1635) 

Moderate 

Empirical evidence from in vivo and in vitro studies demonstrates increased DNA strand breaks from oxidative stress. Multiple studies show dose-response effects, though time response effects are difficult to monitor for both KEs.  

Increase, DNA Strand Breaks (KE#1635) → Altered Stress Response Signaling  (KE#2244) 

Moderate 

A few studies demonstrate dose-concordance, and multiple studies demonstrate time-concordance for this relationship. DNA strand breaks were observed prior to altered stress response signaling. 

Oxidative Stress (KE#1392) → Tissue Resident Cell Activation (KE#1492) 

 Moderate 

 The literature demonstrates that an increase in the level of stressor related to oxidative stress results in an increase in cellular activation of microglial cells or astrocytes and this relationship is consistent between studies. However, dose and time concordance are unclear as there is limited data that describes oxidative stress occurring at lower doses or before tissue resident cell activation. 

Oxidative Stress (KE#1392) → Altered Stress Response Signaling (KE#2244) 

Moderate 

Many studies demonstrate dose-concordance, and few demonstrate time-concordance for this relationship. Oxidative stress was often observed at lower, or the same doses as altered signaling and sometimes also at earlier times as altered signaling. However, only a few specific stressors are used in this KER and inconsistencies are present, likely due to different experimental designs. 

Altered Stress Response  Signaling (KE#2244) →  Increase, Abnormal Neural Remodeling (KE#2098) 

 Moderate 

 Many studies demonstrate dose-concordance in multiple signaling pathways. Studies have also shown that signaling pathways are altered before abnormal neural remodeling is observed. However, inconsistent changes in signaling pathways may be due to the context-dependence of signaling pathways as they can have different biological processes. 

Tissue Resident Cell Activation (KE#1492) → Increase, Pro-inflammatory Mediators (KE#2097)  

Moderate 

 Studies consistently observed changes in astrocyte and microglial activation at lower or the same dose as increased pro-inflammatory mediators and many studies also found changes in astrocyte and microglial activation earlier or at the same time as increased pro-inflammatory mediators. However, inconsistencies could be due to differences in experimental conditions. 

Increase, Pro-inflammatory Mediators (KE#2097) → Increase, Abnormal Neural Remodeling (KE#2098) 

Moderate 

 There are multiple studies that show time-concordance, though studies on dose-concordance are lacking. Studies suggest that pro-inflammatory mediators are increased before abnormal neural remodeling occurs, reporting changes as early as 3 hours and persisting as long as 3 months. However, additional studies describing dose-concordance would improve empirical support. 

Increase, Abnormal Neural Remodeling (KE#2098) → Impairment, Learning and Memory (AO, KE#341)   

Moderate 

 Multiple studies suggest dose- and time-response effects of deposited energy leading to abnormal neural remodeling and impaired learning and memory. However, additional studies at low doses would improve empirical support. Also, discrepancies in the data may be due to experimental set up and type of exposure from the stressor.  

Deposition of Energy (MIE, KE#1686) →  Increase, Abnormal Neural Remodeling (KE#2098) 

Moderate 

Multiple studies suggest dose- and time-response effects of deposition of energy to abnormal neural remodeling. Studies report changes at very low doses. However, responses may be dependent on exposure type. Also, additional studies describing time-concordance would improve empirical support. 

Deposition of Energy (MIE, KE#1686) → Impairment, Learning and Memory (AO, KE#341)   

Moderate 

 Various studies show that ionizing radiation can lead to impairments in learning and memory in a dose and time dependent manner. Although the impairment to learning and memory is well-studied across various doses and over multiple time points, studies often do not show impaired learning and memory with every cognitive test used, contributing to inconsistency in the relationship. 

Deposition of Energy (MIE, KE#1686) → Increase, DNA Strand Breaks (KE#1635) 

High 

There is ample empirical evidence demonstrating the relationship between deposition of energy and increase, DNA strand breaks. Multiple studies in various models show both dose-concordance and time-concordance. 

Increase, DNA Strand Breaks (KE#1635) → Increase, Abnormal Neural Remodeling (KE#2098) 

Moderate 

Multiple studies demonstrate that increased DNA strand breaks lead to increased abnormal neural remodeling. However, additional studies describing both dose-concordance and time-concordance would improve empirical support.  

Increase, Pro-inflammatory Mediators (KE#2097) → Impairment, Learning and Memory (AO, KE#341)   

Moderate 

 Evidence shows that pro-inflammatory mediators increase at lower or the same stressor doses than impaired learning. Also, pro-inflammatory mediators increase before impaired learning and memory is observed. Significant inconsistencies in empirical support across taxa and species that do not align with the expected pattern have not been identified. 

 

Essentiality  

Support for Essentiality of KEs 

Defining Question 

High (Strong) 

Moderate 

Low (Weak) 

Are downstream KEs and/or the AO prevented if an upstream KE is blocked? 

Direct evidence from specifically designed experimental studies illustrating essentiality for at least one of the important KEs 

Indirect evidence that sufficient modification of an expected modulating factor attenuates or augments a KE 

No or contradictory experimental evidence of the essentiality of any of the KEs 

MIE, KE#1686: Deposition of energy 

Moderate 

 Deposition of energy is difficult to test for essentiality as deposition of energy is a physical stressor and cannot be blocked/decreased using chemicals. In the absence of energy deposition or presence of shielding as demonstrated there should be no alterations to the relevant downstream KE. 

KE#1392: Oxidative stress 

Moderate 

Treatments with antioxidants, which reduce oxidative stress, attenuate downstream microglial activation and DNA strand breaks. 

KE#1635: Increase, DNA Strand Breaks 

Moderate 

Prevention of DNA strand breaks, for example treatment with mesenchymal stem cell-conditioned medium or minocycline, has restored altered signaling and prevented abnormal neural remodeling.  

KE#2244: Altered Stress Response  Signaling  

Moderate 

Knockout models or inhibition of key signaling molecules, have all been shown to influence the effects of altered stress response signaling on abnormal neural remodeling through the attenuation of stressor-induced changes in neuronal morphology and growth. The KE has also been shown to be modulated by sex and exercise. 

KE#1492: Tissue Resident Cell Activation 

Moderate 

For example, the attenuation of the activation of tissue-resident cells and consequent reduction in pro- inflammatory mediators has been reported using multiple drugs 

KE#2097: Increase, Pro-inflammatory Mediators 

Moderate 

Treatments with anti-inflammatory drugs, antioxidants or hormones have influenced the effects of pro- inflammatory mediators and improved neuronal structure and function. Anti-inflammatory drugs have also influenced the effects of pro-inflammatory mediators and rescued the impairments seen in learning and memory.  

KE#2098: Increase, Abnormal Neural Remodeling 

Moderate 

No identified studies describe essentiality of neural remodeling as it cannot be blocked / decreased using 

chemicals. 

   

Quantitative Consideration

Overall quantitative understanding for the KERs in the AOP is low. Despite evidence supporting the KERs, there is limited understanding of the trends of the relationships between KEs. In the KERs of this AOP, there are positive relationships between the KEs (i.e., an increase in the upstream KE elicits a change in the downstream KE); however, the trends and shapes of the relationships are not well established due to differences in experimental parameters, such as model, radiation type, doses, dose rate, and time of measurements. The measures of the KEs cannot be precisely predicted based on relevant measures of the other KEs in the KER and the quantitative descriptions does not account for all known modulating factors and feedback or feedforward mechanisms. 

Review of the Quantitative Understanding for each KER 

Defining Question 

High (Strong) 

Moderate 

Low (Weak) 

To what extent can a change in a KEdownstream can be predicted for a KEupstream? With what precision the uncertainty in the prediction of the KEdownstream can be quantified? To what extent are the known modulating factors of feedback mechanisms accounted for? To what extent to which the relationships described can be reliably generalized across the applicability domain of the KER? 

Change in KEdownstream can be precisely predicted based on a relevant measure of KEupstream; Uncertainty in the quantitative prediction can be precisely estimated from the variability in the relevant KEupstream measure; Known modulating factors and feedback/ feedforward mechanisms are accounted for in the quantitative description; Evidence that the quantitative relationship between the KEs generalizes across the relevant applicability domain of the KER 

Change in KEdownstream can be precisely predicted based on relevant measure of KEupstream; Uncertainty in the quantitative prediction is influenced by factors other than the variability in the relevant KEupstream measure; Quantitative description does not account for all known modulating factors and/or known feedback/ feedforward mechanisms; Quantitative relationship has only been demonstrated for a subset of the overall applicability domain of the KER 

Only a qualitative or semi-quantitative prediction of the change in KEdownstream can be determined from a measure of KEupstream; Known modulating factors and feedback/ feedforward mechanisms are not accounted for; Quantitative relationship has only been demonstrated for a narrow subset of the overall applicability domain of the KER   

Deposition of Energy (MIE, KE#1686) → Oxidative Stress (KE#1392) 

Moderate 

The evidence for this KER suggests that increased deposition of energy elicits increased oxidative stress, and this is supported by measurements from a large range of doses and dose rates. Despite a large amount of available evidence, the shape of the relationship is not clear, and may depend on the endpoints used to measure oxidative stress. 

Deposition of Energy (MIE, KE#1686) → Tissue Resident Cell Activation (KE#1492) 

Moderate 

Despite a moderate amount of evidence supporting this KER such that increased deposition of energy leads to increased tissue resident cell activation, no clear trends have been established to allow for prediction of the precise amount of tissue resident cell activation based on the deposition of energy. It is likely that the abundance of tissue resident cell activation depends on the biological model, radiation type, radiation dose range and radiation dose rate. 

Oxidative Stress (KE#1392) → Increase, DNA Strand Breaks (KE#1635) 

Moderate 

There are models available that predict DNA strand breaks after deposition of energy; however the exact contribution of indirect DNA damage from oxidative stress is unknown. The quantitative understanding of the relationship depends on the biological target, the radiation quality, and the dose. 

Increase, DNA Strand Breaks (KE#1635) → Altered Stress Response  Signaling (KE#2244) 

Low 

There are no trends or mathematical models that describe this relationship. Quantitative relationships between these two KEs depend on experimental model and dose. 

 Oxidative Stress (KE#1392) → Tissue Resident Cell Activation (KE#1492) 

 Low 

Overall, the evidence suggests that there is a positive relationship between increased oxidative stress and tissue resident cell activation. However, studies often report a single dose or time-point, making it difficult to quantitatively predict the amount of tissue resident cell activation after an increase in oxidative stress. 

 Oxidative Stress (KE#1392) → Altered Stress Response Signaling  (KE#2244) 

Low 

A precise quantitative relationship between oxidative stress and altered stress response signalingis difficult to determine because each study uses a different experimental design. The exact changes to signaling pathways due to oxidative stress will depend on the cell type and species. In addition, modulating factors are often not indicated or accounted for in studies. 

Altered Stress Response Signaling (KE#2244) → Increase, Abnormal Neural Remodeling (KE#2098) 

Low 

The complexity of the many synergistic and antagonistic signaling pathways influenced by a stressor will lead to a cumulative change not representative of the change to a single or a few signaling pathways. Therefore, no trend or mathematical model has been established to quantitatively determine the relationship between altered stress response signaling and endpoints related to abnormal neural remodeling. 

Tissue Resident Cell Activation (KE#1492) → Increase, Pro-inflammatory Mediators (KE#2097)  

Low 

Despite evidence to show that tissue-resident cell activation leads to an increase in pro-inflammatory mediators, it is difficult to compare results and identify a trend as each study uses different models, stressors, doses and time scales. No trend or mathematical model has been established to quantitatively determine the increase in pro-inflammatory mediators after glial cell activation. 

Increase, Pro-inflammatory Mediators (KE#2097) → Increase, Neural Remodeling (KE#2098) 

Low 

Despite studies showing time concordance, no trends or mathematical models have been established that can describe the relationship between increased pro-inflammatory mediators and abnormal neural remodeling. 

Increase, Abnormal Neural Remodeling (KE#2098) → Impairment, Learning and Memory (AO, KE#341)   

Low 

Although a linear relationship was found between reductions in spine density and impairment on a test of learning and memory, no further trends have been established. There may be sex-, dose-, time- and radiation type-dependent differences in the effects of ionizing radiation on abnormal neural remodeling to impairment in learning and memory. 

Deposition of Energy (MIE, KE#1686) →  Increase, Abnormal Neural Remodeling (KE#2098) 

Low 

Evidence in support of this KER suggests that deposition of energy elicits a dose-dependent change in neural remodeling. However, the evidence base for the KER has some inconsistencies. In addition, the age of the subjects may impact the trend of the relationship. Ultimately the shape of the trend between the two KEs is unclear and may depend on the biological model used, age of the subjects, type of radiation and radiation dose/dose-rate. 

Deposition of Energy (MIE, KE#1686) → Impairment, Learning and Memory (AO, KE#341)   

Low 

Deposition of energy from ionizing radiation is consistently shown to impair learning and memory. However, no trend or mathematical model has been established to accurately describe this relationship. Much of the evidence for this KER comes from different experimental model species, exposures, time scales and cognitive function tests to assess the AO, making comparisons between studies and quantitative model development difficult. 

Deposition of Energy (MIE, KE#1686) → Increase, DNA Strand Breaks (KE#1635) 

High 

There are models available that predict DNA strand breaks after deposition of energy due to exposure to ionizing radiation. The quantitative understanding of the relationship depends on the biological target, the radiation quality, and the dose and these have been well studied.  

Increase, DNA Strand Breaks (KE#1635) → Increase, Abnormal Neural Remodeling (KE#2098) 

Low 

There are multiple studies that report abnormal neural remodeling in response to DNA strand breaks. However, no trend or mathematical model has been established to accurately describe this relationship. 

Pro-inflammatory Mediators (KE#2097) → Impairment, Learning and Memory (AO, KE#341)   

Low 

Most studies report that an increase in pro-inflammatory mediators to impaired learning and memory; however, semi-quantitative measurements have been described for either upstream or downstream KE. Some, but not all, known modulating factors have been accounted for, mainly consisting of anti-inflammatory treatments. No trends or quantitative models have described this relationship.  

Considerations for Potential Applications of the AOP (optional)

This AOP was developed to bring together mechanistic knowledge in the area of impairments in learning and memory from exposure to radiation. It includes studies from multiple species at multiple life stages and radiation exposures that contain different doses, dose-rates, and radiation qualities. Relevant studies have been selected, consolidated, and reported using the framework. 

There are multiple considerations for potential applications of the AOP. Since exposure to radiation can occur in humans from multiple events, including occupational settings, accidental exposures, nuclear events, radiotherapy treatment and space travel, understanding its impact on CNS structure and function is essential. This AOP outlines a biological framework for the connection between the MIE and AO. It can be expanded to other pathophysiologies of the CNS. The qualitative information presented within each KER can be used to inform on risk-model strategies, countermeasure development, and identification of gaps in the evidence base where more research is necessary. Importantly, this AOP is a dynamic document so it can be modified as new evidence emerges. 

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Zigman, S. et al. (1995), “Damage to cultured lens epithelial cells of squirrels and rabbits by UV-A (99.9%) plus UV-B (0.1%) radiation and alpha tocopherol protection”, Molecular and cellular biochemistry, Vol. 143, Springer, London, https://doi.org/10.1007/BF00925924.   

Zonis, S. et al. (2015), "Chronic intestinal inflammation alters hippocampal neurogenesis", Journal of Neuroinflammation, Vol. 12/1, Springer Nature, Berlin, https://doi.org/10.1186/s12974-015-0281-0. 

 

 

 

Appendix 1

List of MIEs in this AOP

Event: 1686: Deposition of Energy

Short Name: Energy Deposition

Key Event Component

Process Object Action
energy deposition event increased

AOPs Including This Key Event

AOP ID and Name Event Type
Aop:272 - Deposition of energy leading to lung cancer MolecularInitiatingEvent
Aop:432 - Deposition of Energy by Ionizing Radiation leading to Acute Myeloid Leukemia MolecularInitiatingEvent
Aop:386 - Deposition of ionizing energy leading to population decline via inhibition of photosynthesis MolecularInitiatingEvent
Aop:387 - Deposition of ionising energy leading to population decline via mitochondrial dysfunction MolecularInitiatingEvent
Aop:388 - Deposition of ionising energy leading to population decline via programmed cell death MolecularInitiatingEvent
Aop:435 - Deposition of ionising energy leads to population decline via pollen abnormal MolecularInitiatingEvent
Aop:216 - Deposition of energy leading to population decline via DNA strand breaks and follicular atresia MolecularInitiatingEvent
Aop:238 - Deposition of energy leading to population decline via DNA strand breaks and oocyte apoptosis MolecularInitiatingEvent
Aop:311 - Deposition of energy leading to population decline via DNA oxidation and oocyte apoptosis MolecularInitiatingEvent
Aop:299 - Deposition of energy leading to population decline via DNA oxidation and follicular atresia MolecularInitiatingEvent
Aop:441 - Ionizing radiation-induced DNA damage leads to microcephaly via apoptosis and premature cell differentiation MolecularInitiatingEvent
Aop:444 - Ionizing radiation leads to reduced reproduction in Eisenia fetida via reduced spermatogenesis and cocoon hatchability MolecularInitiatingEvent
Aop:470 - Deposition of energy leads to abnormal vascular remodeling MolecularInitiatingEvent
Aop:473 - Energy deposition from internalized Ra-226 decay lower oxygen binding capacity of hemocyanin MolecularInitiatingEvent
Aop:478 - Deposition of energy leading to occurrence of cataracts MolecularInitiatingEvent
Aop:482 - Deposition of energy leading to occurrence of bone loss MolecularInitiatingEvent
Aop:483 - Deposition of Energy Leading to Learning and Memory Impairment MolecularInitiatingEvent

Stressors

Name
Ionizing Radiation

Biological Context

Level of Biological Organization
Molecular

Domain of Applicability

Taxonomic Applicability
Term Scientific Term Evidence Links
human Homo sapiens Moderate NCBI
rat Rattus norvegicus Moderate NCBI
mouse Mus musculus Moderate NCBI
nematode Caenorhabditis elegans High NCBI
zebrafish Danio rerio High NCBI
thale-cress Arabidopsis thaliana High NCBI
Scotch pine Pinus sylvestris Moderate NCBI
Daphnia magna Daphnia magna High NCBI
Chlamydomonas reinhardtii Chlamydomonas reinhardtii Moderate NCBI
common brandling worm eisenia fetida Moderate NCBI
Lemna minor Lemna minor High NCBI
Salmo salar Salmo salar Low NCBI
Life Stage Applicability
Life Stage Evidence
All life stages High
Sex Applicability
Sex Evidence
Unspecific Low

Energy can be deposited into any substrate, both living and non-living; it is independent of age, taxa, sex, or life-stage. 

Taxonomic applicability: This MIE is not taxonomically specific. 

Life stage applicability: This MIE is not life stage specific. 

Sex applicability: This MIE is not sex specific. 

Key Event Description

Deposition of energy refers to events where energetic subatomic particles, nuclei, or electromagnetic radiation deposit energy in the media through which they transverse. The energy may either be sufficient (e.g. ionizing radiation) or insufficient (e.g. non-ionizing radiation) to ionize atoms or molecules (Beir et al.,1999). 

Ionizing radiation can cause the ejection of electrons from atoms and molecules, thereby resulting in their ionization and the breakage of chemical bonds.  The excitation of molecules can also occur without ionization. These events are stochastic and unpredictable. The energy of these subatomic particles or electromagnetic waves ranges from 124 keV to 5.4 MeV and is dependent on the source and type of radiation (Zyla et al., 2020). Not all electromagnetic radiation is ionizing; as the incident radiation must have sufficient energy to free electrons from the electron orbitals of the atom or molecule. The energy deposited can induce direct and indirect ionization events and can result from internal (injections, inhalation, ingestion) or external exposure. 

Direct ionization is the principal path where charged particles interact with biological structures such as DNA, proteins or  membranes to cause biological damage. Photons, which are electromagnetic waves can also deposit energy to cause direct which themselves can indirectly damage critical targets such as DNA (Beir et al., 1999; Balagamwala et al., 2013) or alter cellular processes. Given the fundamental nature of energy deposition by radioactive/unstable nuclei, nucleons or elementary particles in material, this process is universal to all biological contexts. 

The spatial structure of ionizing energy deposition along the resulting particle track is represented as linear energy transfer (LET) (Hall and Giaccia, 2018 UNSCEAR, 2020). High LET refers to energy mostly above 10 keV μm-1 which produces more complex, dense structural damage than low LET radiation (below 10 keV μm-1). Low-LET particles produce sparse ionization events such as photons (X- and gamma rays), as well as high-energy protons. Low LET radiation travels farther into tissue but deposits smaller amounts of energy, whereas high LET radiation, which includes heavy ions, alpha particles and high-energy neutrons, does not travel as far but deposits larger amounts of energy into tissue at the same absorbed dose. The biological effect of the deposition of energy can be modulated by varying dose and dose rate of exposure, such as acute, chronic, or fractionated exposures (Hall and Giaccia, 2018). 

Non-ionizing radiation is electromagnetic waves that does not have enough energy to break bonds and induce ion formation but it can cause molecules to excite and vibrate faster resulting in biological effects. Examples of non-ionizing radiation include radio waves (wavelength: 100 km-1m), microwaves (wavelength: 1m-1mm), infrared radiation (wavelength: 1mm- 1 um), visible light (wavelengths: 400-700 nm), and ultraviolet radiation of longer wavelengths such as UVB (wavelengths: 315-400nm) and UVA (wavelengths: 280-315 nm). 

How it is Measured or Detected

Radiation type 

Assay Name 

References 

Description 

OECD Approved Assay 

Ionizing radiation 

Monte Carlo Simulations (eg. Geant4) 

Douglass et al., 2013; Douglass et al., 2012; Zyla et al., 2020 

Monte Carlo simulations are based on a computational algorithm that mathematically models the deposition of energy into materials. 

No 

Ionizing radiation 

Fluorescent Nuclear Track Detector (FNTD) 

Sawakuchi, 2016; Niklas, 2013; Kodaira & Konishi, 2015 

FNTDs are biocompatible chips with crystals of aluminum oxide doped with carbon and magnesium; used in conjunction with fluorescent microscopy, these FNTDs allow for the visualization and the linear energy transfer (LET) quantification of tracks produced by the deposition of energy into a material. 

No 

Ionizing radiation 

Tissue equivalent proportional counter (TEPC) 

Straume et al, 2015 

Measure the LET spectrum and calculate the equivalent dose 

No 

Ionizing radiation 

alanine dosimeters/NanoDots 

Lind et al. 2019 

Xie et al., 2022 

Alanine dosimeters use the amino acid alanine to detect radiation-induced changes, and nanodots leverage nano-scale technology to provide high precision and sensitivity in radiation dose measurements

No 

Non-ionizing radiation 

UV meters or radiometers 

Xie et al., 2020 

UVA/UVB (irradiance intensity), UV dosimeters (accumulated irradiance over time), Spectrophotometer (absorption of UV by a substance or material) 

No 

 

References

Balagamwala, E. H. et al. (2013), “Introduction to radiotherapy and standard teletherapy techniques”, Dev Ophthalmol, Vol. 52, Karger, Basel, https://doi.org/10.1159/000351045 

Beir, V. et al. (1999), “The Mechanistic Basis of Radon-Induced Lung Cancer”, in Health Risks of Exposure to Radon: BEIR VI, National Academy Press, Washington, D.C., https://doi.org/10.17226/5499 

Douglass, M. et al. (2013), “Monte Carlo investigation of the increased radiation deposition due to gold nanoparticles using kilovoltage and megavoltage photons in a 3D randomized cell model”, Medical Physics, Vol. 40/7, American Institute of Physics, College Park, https://doi.org/10.1118/1.4808150 

Douglass, M. et al. (2012), “Development of a randomized 3D cell model for Monte Carlo microdosimetry simulations.”, Medical Physics, Vol. 39/6, American Institute of Physics, College Park, https://doi.org/10.1118/1.4719963 

Hall, E. J. and Giaccia, A.J. (2018), Radiobiology for the Radiologist, 8th edition, Wolters Kluwer, Philadelphia. 

Kodaira, S. and Konishi, T. (2015), “Co-visualization of DNA damage and ion traversals in live mammalian cells using a fluorescent nuclear track detector.”, Journal of Radiation Research, Vol. 56/2, Oxford University Press, Oxford, https://doi.org/10.1093/jrr/rru091 

Lind, O.C., D.H. Oughton and Salbu B. (2019), "The NMBU FIGARO low dose irradiation facility", International Journal of Radiation Biology, Vol. 95/1, Taylor & Francis, London, https://doi.org/10.1080/09553002.2018.1516906. 

Sawakuchi, G.O. and Akselrod, M.S. (2016), “Nanoscale measurements of proton tracks using fluorescent nuclear track detectors.”, Medical Physics, Vol. 43/5, American Institute of Physics, College Park, https://doi.org/10.1118/1.4947128 

Straume, T. et al. (2015), “Compact Tissue-equivalent Proportional Counter for Deep Space Human Missions.”, Health physics, Vol. 109/4, Lippincott Williams & Wilkins, Philadelphia, https://doi.org/10.1097/HP.0000000000000334  

Niklas, M. et al. (2013), “Engineering cell-fluorescent ion track hybrid detectors.”, Radiation Oncology, Vol. 8/104, BioMed Central, London, https://doi.org/10.1186/1748- 717X-8-141 

UNSCEAR (2020), Sources, effects and risks of ionizing radiation, United Nations. 

 Xie, Li. et al. (2022), "Ultraviolet B Modulates Gamma Radiation-Induced Stress Responses in Lemna Minor at Multiple Levels of Biological Organisation", SSRN, Elsevier, Amsterdam, http://dx.doi.org/10.2139/ssrn.4081705 . 

Zyla, P.A. et al. (2020), Review of particle physics: Progress of Theoretical and Experimental Physics, 2020 Edition, Oxford University Press, Oxford. 

 

 

List of Key Events in the AOP

Event: 1392: Oxidative Stress

Short Name: Oxidative Stress

Key Event Component

Process Object Action
oxidative stress increased

AOPs Including This Key Event

AOP ID and Name Event Type
Aop:220 - Cyp2E1 Activation Leading to Liver Cancer KeyEvent
Aop:17 - Binding of electrophilic chemicals to SH(thiol)-group of proteins and /or to seleno-proteins involved in protection against oxidative stress during brain development leads to impairment of learning and memory KeyEvent
Aop:284 - Binding of electrophilic chemicals to SH(thiol)-group of proteins and /or to seleno-proteins involved in protection against oxidative stress leads to chronic kidney disease KeyEvent
Aop:377 - Dysregulated prolonged Toll Like Receptor 9 (TLR9) activation leading to Multi Organ Failure involving Acute Respiratory Distress Syndrome (ARDS) KeyEvent
Aop:411 - Oxidative stress Leading to Decreased Lung Function MolecularInitiatingEvent
Aop:424 - Oxidative stress Leading to Decreased Lung Function via CFTR dysfunction MolecularInitiatingEvent
Aop:425 - Oxidative Stress Leading to Decreased Lung Function via Decreased FOXJ1 MolecularInitiatingEvent
Aop:429 - A cholesterol/glucose dysmetabolism initiated Tau-driven AOP toward memory loss (AO) in sporadic Alzheimer's Disease with plausible MIE's plug-ins for environmental neurotoxicants KeyEvent
Aop:452 - Adverse outcome pathway of PM-induced respiratory toxicity KeyEvent
Aop:464 - Calcium overload in dopaminergic neurons of the substantia nigra leading to parkinsonian motor deficits KeyEvent
Aop:470 - Deposition of energy leads to abnormal vascular remodeling KeyEvent
Aop:478 - Deposition of energy leading to occurrence of cataracts KeyEvent
Aop:479 - Mitochondrial complexes inhibition leading to left ventricular function decrease via increased myocardial oxidative stress KeyEvent
Aop:481 - AOPs of amorphous silica nanoparticles: ROS-mediated oxidative stress increased respiratory dysfunction and diseases. KeyEvent
Aop:482 - Deposition of energy leading to occurrence of bone loss KeyEvent
Aop:483 - Deposition of Energy Leading to Learning and Memory Impairment KeyEvent
Aop:505 - Reactive Oxygen Species (ROS) formation leads to cancer via inflammation pathway KeyEvent
Aop:521 - Essential element imbalance leads to reproductive failure via oxidative stress KeyEvent
Aop:26 - Calcium-mediated neuronal ROS production and energy imbalance AdverseOutcome
Aop:488 - Increased reactive oxygen species production leading to decreased cognitive function KeyEvent
Aop:396 - Deposition of ionizing energy leads to population decline via impaired meiosis KeyEvent
Aop:437 - Inhibition of mitochondrial electron transport chain (ETC) complexes leading to kidney toxicity KeyEvent
Aop:535 - Binding and activation of GPER leading to learning and memory impairments KeyEvent
Aop:171 - Chronic cytotoxicity of the serous membrane leading to pleural/peritoneal mesotheliomas in the rat. KeyEvent
Aop:138 - Organic anion transporter (OAT1) inhibition leading to renal failure and mortality KeyEvent
Aop:177 - Cyclooxygenase 1 (COX1) inhibition leading to renal failure and mortality KeyEvent
Aop:186 - unknown MIE leading to renal failure and mortality KeyEvent
Aop:200 - Estrogen receptor activation leading to breast cancer KeyEvent
Aop:444 - Ionizing radiation leads to reduced reproduction in Eisenia fetida via reduced spermatogenesis and cocoon hatchability KeyEvent
Aop:447 - Kidney failure induced by inhibition of mitochondrial electron transfer chain through apoptosis, inflammation and oxidative stress pathways KeyEvent
Aop:476 - Adverse Outcome Pathways diagram related to PBDEs associated male reproductive toxicity KeyEvent
Aop:497 - ERa inactivation alters mitochondrial functions and insulin signalling in skeletal muscle and leads to insulin resistance and metabolic syndrome KeyEvent
Aop:457 - Succinate dehydrogenase inhibition leading to increased insulin resistance through reduction in circulating thyroxine KeyEvent
Aop:459 - AhR activation in the thyroid leading to Subsequent Adverse Neurodevelopmental Outcomes in Mammals KeyEvent
Aop:507 - Nrf2 inhibition leading to vascular disrupting effects via inflammation pathway KeyEvent
Aop:509 - Nrf2 inhibition leading to vascular disrupting effects through activating apoptosis signal pathway and mitochondrial dysfunction KeyEvent
Aop:510 - Demethylation of PPAR promotor leading to vascular disrupting effects KeyEvent
Aop:511 - The AOP framework on ROS-mediated oxidative stress induced vascular disrupting effects KeyEvent
Aop:538 - Adverse outcome pathway of PFAS-induced vascular disrupting effects via activating oxidative stress related pathways KeyEvent
Aop:260 - CYP2E1 activation and formation of protein adducts leading to neurodegeneration KeyEvent
Aop:450 - Inhibition of AChE and activation of CYP2E1 leading to sensory axonal peripheral neuropathy and mortality KeyEvent
Aop:501 - Excessive iron accumulation leading to neurological disorders KeyEvent
Aop:540 - Oxidative Stress in the Fish Ovary Leads to Reproductive Impairment via Reduced Vitellogenin Production KeyEvent
Aop:471 - Various neuronal effects induced by elavl3, sox10, and mbp KeyEvent
Aop:31 - Oxidation of iron in hemoglobin leading to hematotoxicity KeyEvent

Stressors

Name
Acetaminophen
Chloroform
furan
Platinum
Aluminum
Cadmium
Mercury
Uranium
Arsenic
Silver
Manganese
Nickel
Zinc
nanoparticles

Biological Context

Level of Biological Organization
Molecular

Domain of Applicability

Taxonomic Applicability
Term Scientific Term Evidence Links
rodents rodents High NCBI
Homo sapiens Homo sapiens High NCBI
Life Stage Applicability
Life Stage Evidence
All life stages High
Sex Applicability
Sex Evidence
Mixed High

Taxonomic applicability: Occurrence of oxidative stress is not species specific.  

Life stage applicability: Occurrence of oxidative stress is not life stage specific. 

Sex applicability: Occurrence of oxidative stress is not sex specific. 

Evidence for perturbation by prototypic stressor: There is evidence of the increase of oxidative stress following perturbation from a variety of stressors including exposure to ionizing radiation and altered gravity (Bai et al., 2020; Ungvari et al., 2013; Zhang et al., 2009).  

Key Event Description

Oxidative stress is defined as an imbalance in the production of reactive oxygen species (ROS) and antioxidant defenses. High levels of oxidizing free radicals can be very damaging to cells and molecules within the cell.  As a result, the cell has important defense mechanisms to protect itself from ROS. For example, Nrf2 is a transcription factor and master regulator of the oxidative stress response. During periods of oxidative stress, Nrf2-dependent changes in gene expression are important in regaining cellular homeostasis (Nguyen, et al., 2009) and can be used as indicators of the presence of oxidative stress in the cell. 

In addition to the directly damaging actions of ROS, cellular oxidative stress also changes cellular activities on a molecular level. Redox sensitive proteins have altered physiology in the presence and absence of ROS, which is caused by the oxidation of sulfhydryls to disulfides on neighboring amino acids (Antelmann & Helmann 2011). Importantly Keap1, the negative regulator of Nrf2, is regulated in this manner (Itoh, et al. 2010). 

ROS also undermine the mitochondrial defense system from oxidative damage. The antioxidant systems consist of superoxide dismutase, catalase, glutathione peroxidase and glutathione reductase, as well as antioxidants such as α-tocopherol and ubiquinol, or antioxidant vitamins and minerals including vitamin E, C, carotene, lutein, zeaxanthin, selenium, and zinc (Fletcher, 2010). The enzymes, vitamins and minerals catalyze the conversion of ROS to non-toxic molecules such as water and O2. However, these antioxidant systems are not perfect and endogenous metabolic processes and/or exogenous oxidative influences can trigger cumulative oxidative injuries to the mitochondria, causing a decline in their functionality and efficiency, which further promotes cellular oxidative stress (Balasubramanian, 2000; Ganea & Harding, 2006; Guo et al., 2013; Karimi et al., 2017).  

However, an emerging viewpoint suggests that ROS-induced modifications may not be as detrimental as previously thought, but rather contribute to signaling processes (Foyer et al., 2017). 

 

Sources of ROS Production 

Direct Sources: Direct sources involve the deposition of energy onto water molecules, breaking them into active radical species. When ionizing radiation hits water, it breaks it into hydrogen (H*) and hydroxyl (OH*) radicals by destroying its bonds. The hydrogen will create hydroxyperoxyl free radicals (HO2*) if oxygen is available, which can then react with another of itself to form hydrogen peroxide (H2O2) and more O2 (Elgazzar and Kazem, 2015). Antioxidant mechanisms are also affected by radiation, with catalase (CAT) and peroxidase (POD) levels rising as a result of exposure (Seen et al. 2018; Ahmad et al. 2021).  

Indirect Sources: An indirect source of ROS is the mitochondria, which is one of the primary producers in eukaryotic cells (Powers et al., 2008).  As much as 2% of the electrons that should be going through the electron transport chain in the mitochondria escape, allowing them an opportunity to interact with surrounding structures. Electron-oxygen reactions result in free radical production, including the formation of hydrogen peroxide (H2O2) (Zhao et al., 2019). The electron transport chain, which also creates ROS, is activated by free adenosine diphosphate (ADP), O2, and inorganic phosphate (Pi) (Hargreaves et al. 2020; Raimondi et al. 2020; Vargas-Mendoza et al. 2021). The first and third complexes of the transport chain are the most relevant to mammalian ROS production (Raimondi et al., 2020). The mitochondria has its own set of DNA and it is a prime target of oxidative damage (Guo et al., 2013). ROS is also produced through nicotinamide adenine dinucleotide phosphate oxidase (Nox) stimulation, an event commenced by angiotensin II, a product/effector of the renin-angiotensin system (Nguyen Dinh Cat et al. 2013; Forrester et al. 2018). Other ROS producers include xanthine oxidase, immune cells (macrophage, neutrophils, monocytes, and eosinophils), phospholipase A2 (PLA2), monoamine oxidase (MAO), and carbon-based nanomaterials (Powers et al. 2008; Jacobsen et al. 2008; Vargas-Mendoza et al. 2021). 

How it is Measured or Detected

Oxidative Stress: Direct measurement of ROS is difficult because ROS are unstable. The presence of ROS can be assayed indirectly by measurement of cellular antioxidants, or by ROS-dependent cellular damage. Listed below are common methods for detecting the KE, however there may be other comparable methods that are not listed 

  • Detection of ROS by chemiluminescence (https://www.sciencedirect.com/science/article/abs/pii/S0165993606001683) 
  • Detection of ROS by chemiluminescence is also described in OECD TG 495 to assess phototoxic potential. 
  • Glutathione (GSH) depletion. GSH can be measured by assaying the ratio of reduced to oxidized glutathione (GSH:GSSG) using a commercially available kit (e.g., http://www.abcam.com/gshgssg-ratio-detection-assay-kit-fluorometric-green- ab138881.html). 
  • TBARS. Oxidative damage to lipids can be measured by assaying for lipid peroxidation using TBARS (thiobarbituric acid reactive substances) using a commercially available kit. 
  • 8-oxo-dG. Oxidative damage to nucleic acids can be assayed by measuring 8-oxo-dG adducts (for which there are a number of ELISA based commercially available kits),or HPLC, described in Chepelev et al. (Chepelev, et al. 2015). 

  

Molecular Biology: Nrf2. Nrf2’s transcriptional activity is controlled post-translationally by oxidation of Keap1. Assay for Nrf2 activity include: 

  • Immunohistochemistry for increases in Nrf2 protein levels and translocation into the nucleus Western blot for increased Nrf2 protein levels 
  • Western blot of cytoplasmic and nuclear fractions to observe translocation of Nrf2 protein from the cytoplasm to the nucleus qPCR of Nrf2 target genes (e.g., Nqo1, Hmox-1, Gcl, Gst, Prx, TrxR, Srxn), or by commercially available pathway-based qPCR array (e.g., oxidative stress array from SABiosciences) 
  • Whole transcriptome profiling by microarray or RNA-seq followed by pathway analysis (in IPA, DAVID, metacore, etc.) for enrichment of the Nrf2 oxidative stress response pathway (e.g., Jackson et al. 2014) 
  • OECD TG422D describes an ARE-Nrf2 Luciferase test method 

In general, there are a variety of commercially available colorimetric or fluorescent kits for detecting Nrf2 activationOxidative Stress. Direct measurement of ROS is difficult because ROS are unstable. The presence of ROS can be assayed indirectly by measurement of cellular antioxidants, or by ROS-dependent cellular damage. Listed below are common methods for detecting the KE, however there may be other comparable methods that are not listed 

 

  • Detection of ROS by chemiluminescence (https://www.sciencedirect.com/science/article/abs/pii/S0165993606001683) 

  • Detection of ROS by chemiluminescence is also described in OECD TG 495 to assess phototoxic potential. 

  • Glutathione (GSH) depletion. GSH can be measured by assaying the ratio of reduced to oxidized glutathione (GSH:GSSG) using a commercially available kit (e.g., http://www.abcam.com/gshgssg-ratio-detection-assay-kit-fluorometric-green- ab138881.html). 

  • TBARS. Oxidative damage to lipids can be measured by assaying for lipid peroxidation using TBARS (thiobarbituric acid reactive substances) using a commercially available kit. 

  • 8-oxo-dG. Oxidative damage to nucleic acids can be assayed by measuring 8-oxo-dG adducts (for which there are a number of ELISA based commercially available kits),or HPLC, described in Chepelev et al. (Chepelev, et al. 2015). 

  

Molecular Biology: Nrf2. Nrf2’s transcriptional activity is controlled post-translationally by oxidation of Keap1. Assay for Nrf2 activity include: 

  

  • Immunohistochemistry for increases in Nrf2 protein levels and translocation into the nucleus Western blot for increased Nrf2 protein levels 

  • Western blot of cytoplasmic and nuclear fractions to observe translocation of Nrf2 protein from the cytoplasm to the nucleus qPCR of Nrf2 target genes (e.g., Nqo1, Hmox-1, Gcl, Gst, Prx, TrxR, Srxn), or by commercially available pathway-based qPCR array (e.g., oxidative stress array from SABiosciences) 

  • Whole transcriptome profiling by microarray or RNA-seq followed by pathway analysis (in IPA, DAVID, metacore, etc.) for enrichment of the Nrf2 oxidative stress response pathway (e.g., Jackson et al. 2014) 

  • OECD TG422D describes an ARE-Nrf2 Luciferase test method 

In general, there are a variety of commercially available colorimetric or fluorescent kits for detecting Nrf2 activation 

Assay Type & Measured Content 

Description 

Dose Range Studied 

Assay Characteristics (Length/Ease of use/Accuracy) 

ROS 

Formation in the Mitochondria assay (Shaki et al., 2012) 

“The mitochondrial ROS measurement was performed flow cytometry using DCFH-DA. Briefly, isolated kidney mitochondria were incubated with UA (0, 50, 100 and 200 µM) in respiration buffer containing (0.32 mM sucrose, 10mM Tris, 20 mM Mops, 50 µM EGTA, 0.5 mM MgCl2, 0.1 mM KH2PO4 and 5 mM sodium succinate) [32]. In the interval times of 5, 30 and 60 min following the UA addition, a sample was taken and DCFH-DA was added (final concentration, 10 µM) to mitochondria and was then incubated for 10 min.Uranyl acetate-induced ROS generation in isolated kidney mitochondria were determined through the flow cytometry (Partec, Deutschland) equipped with a 488-nm argon ion laser and supplied with the Flomax software and the signals were obtained using a 530-nm bandpass filter (FL-1 channel). Each determination is based on the mean fluorescence intensity of 15,000 counts.” 

 

0, 50,100 and 200 µM of Uranyl Acetate 

 

 Long/ Easy High accuracy 

 

Mitochondrial Antioxidant Content Assay Measuring GSH content (Shaki et al., 2012) 

 

“GSH content was determined using DTNB as the indicator and spectrophotometer method for the isolated mitochondria. The mitochondrial fractions (0.5 mg protein/ml) were incubated with various concentrations of uranyl acetate for 1 h at 30 °C and then 0.1 ml of mitochondrial fractions was added into 0.1 mol/l of phosphate buffers and 0.04% DTNB in a total volume of 3.0 ml (pH 7.4). The developed yellow color was read at 412 nm on a spectrophotometer (UV-1601 PC, Shimadzu, Japan). GSH content was expressed as µg/mg protein.” 

0, 50, 

100, or 

200 µM 

Uranyl Acetate 

 

H2O2 Production Assay Measuring H2O2 Production in isolated mitochondria (Heyno et al., 2008) 

 

“Effect of CdCl2 and antimycin A (AA) on H2O2 production in isolated mitochondria from potato. H2O2 production was measured as scopoletin oxidation. Mitochondria were incubated for 30 min in the measuring buffer 

(see the Materials and Methods) containing 0.5 mM succinate as an electron donor and 0.2 µM mesoxalonitrile 3‐chlorophenylhydrazone (CCCP) as an uncoupler, 10 U horseradish peroxidase and 5 µM scopoletin.”  

0, 10, 30 

µM Cd2+ 

  

2 µM antimycin A 

 

Flow Cytometry ROS & Cell Viability (Kruiderig et al., 1997) 

 

“For determination of ROS, samples taken at the indicated time points were directly transferred to FACScan tubes. Dih123 (10 mM, final concentration) was added and cells were incubated at 37°C in a humidified atmosphere (95% air/5% CO2) for 10 min. At t 5 9, propidium iodide (10 mM, final concentration) was added, and cells were analyzed by flow cytometry at 60 ml/min. Nonfluorescent Dih123 is cleaved by ROS to fluorescent R123 and detected by the FL1 detector as described above for Dc (Van de Water 1995)”“For determination of ROS, samples taken at the indicated time points were directly transferred to FACScan tubes. Dih123 (10 mM, final concentration) was added and cells were incubated at 37°C in a humidified atmosphere (95% air/5% CO2) for 10 min. At t 5 9, propidium iodide (10 mM, final concentration) was added, and cells were analyzed by flow cytometry at 60 ml/min. Nonfluorescent Dih123 is cleaved by ROS to fluorescent R123 and detected by the FL1 detector as described above for Dc (Van de Water 1995)” 

 

 

 

 

 

 

Strong/easy medium 

DCFH-DA 

Assay Detection of hydrogen peroxide production (Yuan et al., 

2016) 

Intracellular ROS production was measured using DCFH-DA as a probe. Hydrogen peroxide oxidizes DCFH to DCF. The probe is hydrolyzed intracellularly to DCFH carboxylate anion. No direct reaction with H2O2 to form fluorescent production. 

 

0-400 

µM 

Long/ Easy High accuracy 

H2-DCF-DAAssay Detection of superoxide production (Thiebault etal., 2007) 

 

This dye is a stable nonpolar compound which diffuses readily into the cells and yields H2-DCF. Intracellular OH or ONOO- react with H2-DCF when cells contain peroxides, to form the highly fluorescent compound DCF, which effluxes the cell. Fluorescence intensity of DCF is measured using a fluorescence spectrophotometer. 

0–600 

µM 

Long/ Easy High accuracy 

CM-H2DCFDA 

Assay (Eruslanov  & Kusmartsev, 2009) 

The dye (CM-H2DCFDA) diffuses into the cell and is cleaved by esterases, the thiol reactive chlormethyl group reacts with intracellular glutathione which can be detected using flow cytometry. 

 

Long/Easy/ High Accuracy 

 

Method of Measurement  

References  

Description  

OECD-Approved Assay 

Chemiluminescence  

(Lu, C. et al., 2006;  

Griendling, K. K., et al., 2016) 

ROS can induce electron transitions in molecules, leading to electronically excited products. When the electrons transition back to ground state, chemiluminescence is emitted and can be measured. Reagents such as luminol and lucigenin are commonly used to amplify the signal.  

No 

 

Spectrophotometry  

(Griendling, K. K., et al., 2016) 

NO has a short half-life. However, if it has been reduced to nitrite (NO2-), stable azocompounds can be formed via the Griess Reaction, and further measured by spectrophotometry.  

No 

Direct or Spin Trapping-Based electron paramagnetic resonance (EPR) Spectroscopy  

(Griendling, K. K., et al., 2016) 

The unpaired electrons (free radicals) found in ROS can be detected with EPR and is known as electron paramagnetic resonance. A variety of spin traps can be used.  

No 

Nitroblue Tetrazolium Assay  

(Griendling, K. K., et al., 2016) 

The Nitroblue Tetrazolium assay is used to measure O2.− levels. O2.− reduces nitroblue tetrazolium (a yellow dye) to formazan (a blue dye), and can be measured at 620 nm.  

No 

Fluorescence analysis of dihydroethidium (DHE) or Hydrocyans  

(Griendling, K. K., et al., 2016) 

Fluorescence analysis of DHE is used to measure O2.− levels.  O2.− is reduced to O2 as DHE is oxidized to 2-hydroxyethidium, and this reaction can be measured by fluorescence. Similarly, hydrocyans can be oxidized by any ROS, and measured via fluorescence.  

No 

Amplex Red Assay  

(Griendling, K. K., et al., 2016) 

Fluorescence analysis to measure extramitochondrial or extracellular H2O2 levels. In the presence of horseradish peroxidase and H2O2, Amplex Red is oxidized to resorufin, a fluorescent molecule measurable by plate reader.  

No 

Dichlorodihydrofluorescein Diacetate (DCFH-DA)  

(Griendling, K. K., et al., 2016) 

An indirect fluorescence analysis to measure intracellular H2O2 levels.  H2O2 interacts with peroxidase or heme proteins, which further react with DCFH, oxidizing it to dichlorofluorescein (DCF), a fluorescent product.  

No 

HyPer Probe  

(Griendling, K. K., et al., 2016) 

Fluorescent measurement of intracellular H2O2 levels. HyPer is a genetically encoded fluorescent sensor that can be used for in vivo and in situ imaging.  

No 

Cytochrome c Reduction Assay  

(Griendling, K. K., et al., 2016) 

The cytochrome c reduction assay is used to measure O2.− levels. O O2.− is reduced to O2 as ferricytochrome c is oxidized to ferrocytochrome c, and this reaction can be measured by an absorbance increase at 550 nm.  

No 

Proton-electron double-resonance imaging (PEDRI)  

(Griendling, K. K., et al., 2016) 

The redox state of tissue is detected through nuclear magnetic resonance/magnetic resonance imaging, with the use of a nitroxide spin probe or biradical molecule.  

No 

 

 

 

 

 

 

Glutathione (GSH) depletion  

(Biesemann, N. et al., 2018)  

A downstream target of the Nrf2 pathway is involved in GSH synthesis. As an indication of oxidation status, GSH can be measured by assaying the ratio of reduced to oxidized glutathione (GSH:GSSG) using a commercially available kit (e.g., http://www.abcam.com/gshgssg-ratio-detection-assay-kit-fluorometric-green-ab138881.html).   

No 

Thiobarbituric acid reactive substances (TBARS)  

(Griendling, K. K., et al., 2016) 

Oxidative damage to lipids can be measured by assaying for lipid peroxidation with TBARS using a commercially available kit.   

No 

Protein oxidation (carbonylation) 

(Azimzadeh et al., 2017; Azimzadeh et al., 2015; Ping et al., 2020) 

Can be determined with ELISA or a commercial assay kit. Protein oxidation can indicate the level of oxidative stress. 

No 

Seahorse XFp Analyzer 

Leung et al. 2018 

The Seahorse XFp Analyzer provides information on mitochondrial function, oxidative stress, and metabolic dysfunction of viable cells by measuring respiration (oxygen consumption rate; OCR) and extracellular pH (extracellular acidification rate; ECAR). 

No 

 

Molecular Biology: Nrf2. Nrf2’s transcriptional activity is controlled post-translationally by oxidation of Keap1. Assays for Nrf2 activity include:  

Method of Measurement  

References  

Description  

OECD-Approved Assay 

Immunohistochemistry  

(Amsen, D., de Visser, K. E., and Town, T., 2009) 

Immunohistochemistry for increases in Nrf2 protein levels and translocation into the nucleus   

No 

qPCR  

(Forlenza et al., 2012) 

qPCR of Nrf2 target genes (e.g., Nqo1, Hmox-1, Gcl, Gst, Prx, TrxR, Srxn), or by commercially available pathway-based qPCR array (e.g., oxidative stress array from SABiosciences)  

No 

Whole transcriptome profiling via microarray or via RNA-seq followed by a pathway analysis 

(Jackson, A. F. et al., 2014) 

Whole transcriptome profiling by microarray or RNA-seq followed by pathway analysis (in IPA, DAVID, metacore, etc.) for enrichment of the Nrf2 oxidative stress response pathway 

No 

 

References

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Antelmann, H. and J. D. Helmann (2011), “Thiol-based redox switches and gene regulation.”, Antioxidants & Redox Signaling, Vol. 14/6, Mary Ann Leibert Inc., Larchmont, https://doi.org/10.1089/ars.2010.3400 

Amsen, D., de Visser, K. E., and Town, T. (2009), “Approaches to determine expression of inflammatory cytokines”, in Inflammation and Cancer, Humana Press, Totowa, https://doi.org/10.1007/978-1-59745-447-6_5  

Azimzadeh, O. et al. (2015), “Integrative Proteomics and Targeted Transcriptomics Analyses in Cardiac Endothelial Cells Unravel Mechanisms of Long-Term Radiation-Induced Vascular Dysfunction”, Journal of Proteome Research, Vol. 14/2, American Chemical Society, Washington, https://doi.org/10.1021/pr501141b 

Azimzadeh, O. et al. (2017), “Proteome analysis of irradiated endothelial cells reveals persistent alteration in protein degradation and the RhoGDI and NO signalling pathways”, International Journal of Radiation Biology, Vol. 93/9, Informa, London, https://doi.org/10.1080/09553002.2017.1339332 

Azzam, E. I. et al. (2012), “Ionizing radiation-induced metabolic oxidative stress and prolonged cell injury”, Cancer Letters, Vol. 327/1-2, Elsevier, Ireland, https://doi.org/10.1016/j.canlet.2011.12.012 

Bai, J. et al. (2020), “Irradiation-induced senescence of bone marrow mesenchymal stem cells aggravates osteogenic differentiation dysfunction via paracrine signaling”, American Journal of Physiology - Cell Physiology, Vol. 318/5, American Physiological Society, Rockville, https://doi.org/10.1152/ajpcell.00520.2019. 

Balasubramanian, D (2000), “Ultraviolet radiation and cataract”, Journal of ocular pharmacology and therapeutics, Vol. 16/3, Mary Ann Liebert Inc., Larchmont, https://doi.org/10.1089/jop.2000.16.285.   

Biesemann, N. et al., (2018), “High Throughput Screening of Mitochondrial Bioenergetics in Human Differentiated Myotubes Identifies Novel Enhancers of Muscle Performance in Aged Mice”, Scientific Reports, Vol. 8/1, Nature Portfolio, London, https://doi.org/10.1038/s41598-018-27614-8.  

Elgazzar, A. and N. Kazem. (2015), “Chapter 23: Biological effects of ionizing radiation” in The Pathophysiologic Basis of Nuclear Medicine, Springer, New York, pp. 540-548 

Eruslanov, E., & Kusmartsev, S. (2010). Identification of ROS using oxidized DCFDA and flow-cytometry. Methods in molecular biology ,N.J.,  Vol. 594,  https://doi.org/10.1007/978-1-60761-411-1_4 

Fletcher, A. E (2010), “Free radicals, antioxidants and eye diseases: evidence from epidemiological studies on cataract and age-related macular degeneration”, Ophthalmic Research, Vol. 44, Karger International, Basel, https://doi.org/10.1159/000316476.  

Forlenza, M. et al. (2012), “The use of real-time quantitative PCR for the analysis of cytokine mRNA levels” in Cytokine Protocols, Springer, New York, https://doi.org/10.1007/978-1-61779-439-1_2  

Forrester, S.J. et al. (2018), “Angiotensin II Signal Transduction: An Update on Mechanisms of Physiology and Pathophysiology”, Physiological Reviews, Vol. 98/3, American Physiological Society, Rockville, https://doi.org/10.1152/physrev.00038.201 

Foyer, C. H., A. V. Ruban, and G. Noctor (2017), “Viewing oxidative stress through the lens of oxidative signalling rather than damage”, Biochemical Journal, Vol. 474/6, Portland Press, England, https://doi.org/10.1042/BCJ20160814 

Ganea, E. and J. J. Harding (2006), “Glutathione-related enzymes and the eye”, Current eye research, Vol. 31/1, Informa, London, https://doi.org/10.1080/02713680500477347.  

Griendling, K. K. et al. (2016), “Measurement of reactive oxygen species, reactive nitrogen species, and redox-dependent signaling in the cardiovascular system: a scientific statement from the American Heart Association”, Circulation research, Vol. 119/5, Lippincott Williams & Wilkins, Philadelphia, https://doi.org/10.1161/RES.0000000000000110  

Guo, C. et al. (2013), “Oxidative stress, mitochondrial damage and neurodegenerative diseases”, Neural regeneration research, Vol. 8/21, Publishing House of Neural Regeneration Research, China, https://doi.org/10.3969/j.issn.1673-5374.2013.21.009 

Hargreaves, M., and L. L. Spriet (2020), “Skeletal muscle energy metabolism during exercise.”, Nature Metabolism, Vol. 2, Nature Portfolio, London, https://doi.org/10.1038/s42255-020-0251-4 

Hladik, D. and S. Tapio (2016), “Effects of ionizing radiation on the mammalian brain”, Mutation Research/Reviews in Mutation Research, Vol. 770, Elsevier, Amsterdam, https://doi.org/10.1016/j.mrrev.2016.08.003 

Itoh, K., J. Mimura and M. Yamamoto (2010), “Discovery of the negative regulator of Nrf2, Keap1: a historical overview”, Antioxidants & Redox Signaling, Vol. 13/11, Mary Ann Leibert Inc., Larchmont, https://doi.org/10.1089/ars.2010.3222  

Jackson, A.F. et al. (2014), “Case study on the utility of hepatic global gene expression profiling in the risk assessment of the carcinogen furan.”, Toxicology and Applied Pharmacology, Vol. 274/11, Elsevier, Amsterdam, https://doi.org/10.1016/j.taap.2013.10.019 

Jacobsen, N.R. et al. (2008), “Genotoxicity, cytotoxicity, and reactive oxygen species induced by single-walled carbon nanotubes and C60 fullerenes in the FE1-MutaTM Mouse lung epithelial cells”, Environmental and Molecular Mutagenesis, Vol. 49/6, John Wiley & Sons, Inc., Hoboken, https://doi.org/10.1002/em.20406 

Karimi, N. et al. (2017), “Radioprotective effect of hesperidin on reducing oxidative stress in the lens tissue of rats”, International Journal of Pharmaceutical Investigation, Vol. 7/3, Phcog Net, Bengaluru, https://doi.org/10.4103/jphi.JPHI_60_17.  

Leung, D.T.H., and Chu, S. (2018), “Measurement of Oxidative Stress: Mitochondrial Function Using the Seahorse System” In: Murthi, P., Vaillancourt, C. (eds) Preeclampsia. Methods in Molecular Biology, vol 1710. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7498-6_22 

Lu, C., G. Song, and J. Lin (2006), “Reactive oxygen species and their chemiluminescence-detection methods”, TrAC Trends in Analytical Chemistry, Vol. 25/10, Elsevier, Amsterdam, https://doi.org/10.1016/j.trac.2006.07.007 

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Zhao, R. Z. et al. (2019), “Mitochondrial electron transport chain, ROS generation and uncoupling”, International journal of molecular medicine, Vol. 44/1, Spandidos Publishing Ltd., Athens, https://doi.org/10.3892/ijmm.2019.4188 

Event: 2244: Altered Stress Response Signaling

Short Name: Altered Stress Response Signaling

Key Event Component

Process Object Action
cell surface receptor signaling pathway increased

AOPs Including This Key Event

Biological Context

Level of Biological Organization
Molecular

Domain of Applicability

Taxonomic Applicability
Term Scientific Term Evidence Links
human Homo sapiens Moderate NCBI
rat Rattus norvegicus Moderate NCBI
mouse Mus musculus Moderate NCBI
Life Stage Applicability
Life Stage Evidence
All life stages Moderate
Sex Applicability
Sex Evidence
Unspecific Low

Taxonomic applicability: Altered stress response signaling is applicable to all animals as cell signaling occurs among animal cells. This includes vertebrates such as humans, mice and rats (Nair et al., 2019). 

Life stage applicability: This key event is not life stage specific. 

Sex applicability: This key event is not sex specific. 

Evidence for perturbation by a stressor: Multiple studies show that signaling pathways can be disrupted by many types of stressors including ionizing radiation and altered gravity (Cheng et al., 2020; Coleman et al., 2021; Su et al., 2020; Yentrapalli et al., 2013). 

Key Event Description

Cells rely on a balance of signaling pathways to maintain their functionality and viability. These pathways integrate signals from both external and internal stressors to coordinate protective responses, thereby enhancing the cell's ability to cope with adverse conditions. Key components of these pathways include the activation of stress-responsive transcription factors such as NF-κB, p53, and AP-1, which regulate the expression of genes involved in cell cycle arrest, DNA repair, and apoptosis. DNA double-strand breaks, for instance, initiate a cascade of events involving the ataxia-telangiectasia mutated (ATM) kinase, the DNA-dependent protein kinase (DNA-PK), and the p53 pathway, ultimately leading to cell cycle arrest and repair mechanisms or apoptosis if the damage is irreparable (Kastan and Lim, 2000). Furthermore, the mitogen-activated protein kinase (MAPK) pathways, including ERK, JNK, and p38, are crucial for the cellular stress response and inflammatory processes (Dent et al., 2003). 

These pathways are essential in regulating cellular survival and mediating apoptosis under various physiological and pathological conditions. Persistent signaling or a pre-existing inflammatory environment can significantly influence cell fate. For instance, the cAMP-PKA pathway, which is involved in neurotransmitter signaling, impacts synaptic plasticity and memory formation (Zhang et al., 2024). The MAPK pathway, encompassing ERK, JNK, and p38 MAP kinases, is vital for cell differentiation, proliferation, and response to stress stimuli (Arthur and Ley, 2013; Yue and Lopez, 2020). The PI3K-Akt pathway promotes cell survival and growth by inhibiting apoptotic processes and supporting metabolic functions (Manning and Cantley, 2007). The p53 pathway is a key regulator of the cellular stress response, often leading to apoptosis in the context of severe DNA damage or oxidative stress (Kruiswijk et al., 2015). 

Exposure to stressors, such as radiation, can disrupt these stress response signaling pathways or lead to persistent activation. For example, the cAMP-PKA pathway can be hindered by reduced cAMP levels and impaired PKA activity, leading to decreased CREB phosphorylation (Zhang et al., 2024). The MAPK pathway is affected by external stressors through the inhibition of ERK activation and subsequent gene expression (Kim and Choi, 2010). The PI3K-Akt pathway, which is vital for cell survival, experiences reduced PI3K activity and Akt signaling, impairing mTOR-mediated protein synthesis (Glaviano et al., 2023; Martini et al., 2014). Activation of the p53 pathway in response to DNA damage can also potentially induce cellular senescence if the damage is irreparable (Ou et al., 2018). Persistent disruptions in these pathways can lead to a wide range of pathophysiological conditions, including neurodegenerative diseases, chronic inflammation, cardiovascular disease, and cancer. 

Key Stress Response Pathways: Description and Components for Measurement 

 

A broad way to measure these pathways concurrently is through the use of omics technologies, Omics technologies (Dai and Shen. 2022) involve comprehensive, high-throughput analysis of DNA, RNA, proteins, and metabolites to understand cellular functions and dynamics, offering a systems-level view of biological processes. Pathway analysis can then be used to gain insights from large amounts of omics data (Palli et al. 2019). Transcriptomics RNA sequence libraries are generated, clustering analysis is done, then sequencing for gene analysis (Qin et al. 2023). Proteins have been analyzed with proteomic analysis through LC-MS/MS analysis, bioinformatic analysis, western blot, qRT-PCR analysis or molecular docking. Metabolites are mass analyzed using the Thermo Q EXACTIVE, and then the edited data matrix is imported to Metabo Analyst for analysis (Hu et al. 2022). 

Additionally, Post-translational modifications (PTMs) can also be measured using techniques such as mass spectrometry, which identifies and quantifies modifications like ubiquitination, glycosylation, and phosphorylation. Western blotting and immunoassays detect specific PTMs using antibodies tailored to particular modifications, while labeling methods can highlight modifications like acetylation and methylation. These measurements help elucidate protein function, stability, and interactions within cellular processes.  

 

AMP-PKA Pathway:  

The AMP-PKA pathway is activated by stressors which engage G protein-coupled receptors (GPCRs). GPCRs activation leads to the production of cyclic adenosine monophosphate (cAMP) by adenylyl cyclase. cAMP then goes on to activate protein kinase A (PKA), which is one of the primary kinases required for several functions in the cell such as DNA repair and initiating a response to oxidative stress (Hunter, 2000; Jessulat et al., 2021; Steinberg and Hardie, 2023). This results in PKA phosphorylating various target proteins, thereby influencing gene expression, metabolism and cell survival.  

MAPK Pathway:  

MAPK pathway is triggered by a variety of stressors, including growth factors, cytokines, hormones and various cellular stressors such as oxidative stress (Kim and Choi., 2010). The pathway involves a kinase cascade starting from receptor tyrosine kinases (RTKs) or GPCRs, leading to the activation of Ras, Raf, MEK, and ERK. Activated ERK then translocates to the nucleus and regulates gene expression, affecting cell growth, differentiation, and apoptosis (Morrison, 2012).  

PI3K-Akt Pathway:  

The PI3K-Akt pathway is activated by stressors through receptor tyrosine kinases (RTKs) or GPCRs. Activation of phosphoinositide 3-kinase (PI3K) generates phosphatidylinositol (3,4,5)-trisphosphate (PIP3), recruiting and activating Akt. Akt then phosphorylates downstream targets, resulting in promotion of cell survival, growth, and metabolism while inhibiting apoptosis (Martini et al., 2014; Jin et al., 2022).  

NF-κB Pathway:  

NF- κB is activated by pro-inflammatory cytokines, pathogens, and stress signals. This pathway involves the activation of IκB kinase (IKK), which phosphorylates IκB, leading to its degradation and the release of NF-κB. NF-κB then translocates to the nucleus and promotes the expression of genes involved in inflammation, immune response, and cell survival (Liu et al., 2017)  

JAK-STAT Pathway:  

The JAK-STAT signaling pathway is triggered by cytokines and growth factors. Janus kinases (JAKs) are then activated, which phosphorylate and activate signal transducer and activator of transcription (STAT) proteins. Activated STATs dimerize and translocate to the nucleus to regulate gene expression, impacting cell proliferation, differentiation, and immune function. This signaling pathway is involved in multiple important biological processes such as differentiation, apoptosis, cell proliferation and immune regulation (Xin et al., 2020).  

HSP (Heat Shock Protein) Pathway:  

HSP (Heat Shock Protein) pathway is induced by heat shock, oxidative stress, and other proteotoxic stresses. Stress signals lead to the activation of heat shock factor 1 (HSF1), which translocates to the nucleus and promotes the expression of heat shock proteins (HSPs). HSPs act as molecular chaperones, aiding in protein folding, preventing aggregation, and promoting protein degradation. These proteins can also work as danger signaling biomarkers, being secreted to the exterior of the cell in response to stress (Zininga et al., 2018)   

p53 Pathway:  

The p53 pathway is activated by DNA damage, oxidative stress, and other genotoxic stresses. DNA damage activates kinases like ATM and ATR, which phosphorylate and stabilize p53. p53 then regulates the expression of genes involved in cell cycle arrest, DNA repair, and apoptosis (Joerger and Fersht, 2016). p53 functions also expand to roles in development, metabolic regulation and stem cell biology.  

Unfolded Protein Response (UPR):  

Unfolded Protein Response (UPR) is triggered by the accumulation of unfolded or misfolded proteins in the endoplasmic reticulum (ER) (Hetz et al., 2020). This pathway involves sensors such as IRE1, PERK, and ATF6, which detect ER stress and activate downstream signaling pathways (Ron and Walter, 2007). UPR aims to restore ER homeostasis by enhancing protein folding capacity, degrading misfolded proteins, and reducing protein synthesis (Grootjans et al., 2016). 

How it is Measured or Detected

Pathway 

Method of Measurement 

Description 

Reference 

OECD Approved Assay 

cAMP-PKA 

ELISA 

Measures intracellular cAMP concentrations to assess activation of the cAMP-PKA pathway. 

Zhu et al., 2016 

No 

 

cAMP-Glo™ Assay 

Monitors the level of intracellular cAMP in the cell with receptors that are modulated by lipid and free fatty acid agonists. 

Hu et al., 2019 

No 

 

Western Blot  

Detects phosphorylation of PKA substrates, indicating pathway activation. 

Zhang et al., 2021 

No 

 

Direct cAMP Enzyme Immunoassay 

 

Uses a cAMP polyclonal antibody to competitively bind the cAMP in the sample which has cAMP covalently bonded. 

 

Nogueira et al., 2015 

No 

 

 RT-PCR 

 

 Quantifies mRNA levels of PKA-RII and PKA-C. 

 

Zhu et al., 2016 

No 

MAPK 

Western Blot  

Detects the phosphorylation state of MAPK family members (ERK, JNK, p38), indicating activation. 

Tan et al., 2022; Xia and Tang 2023 

No 

 

Immunohistochemistry 

Visualizes the activation of MAPKs (JNK and p38) in tissue sections using specific antibodies. 

Er et al., 2022 

No 

 

qRT-PCR 

 

Quantifies mRNA levels of JNK, MAPK1(ERK), and MAPK14(p38) 

 

Xia and Tang 2023 

 

No 

PI3K-Akt 

Western Blot  

Detects phosphorylation of proteins such as PI3K and AKT. 

Jin et al., 2022; Xia and Tang 2023; Bamodu et al., 2020 

No 

 

qRT-PCR 

Quantifies mRNA levels of AKT1 and PI3K. 

Xia and Tang 2023 

No 

p53 

Western Blot  

Measures levels of p53 and its downstream target proteins to assess activation. 

Wei et al., 2024, Mendes et al. 2015 

No 

 

qPCR  

Quantifies mRNA levels of p53-regulated genes such as p21, Bax, and H3K27me3. 

Wei et al., 2024 

No 

 

Chromatin immunoprecipitation (ChIP)  

 Detects p53 binding to DNA at target gene promoters. 

Vousden and Prives, 2009; Wei et al., 2024 

No 

 

Co-immunoprecipitation (Co-IP)  

Identifies p53 protein to protein interactions. 

Wei et al., 2024 

No 

 

Immunofluorescence 

Visualizes localization and expression of p53. 

 

Wei et al., 2024 

 

No 

NF-κB 

Western Blot  

Detects phosphorylation and degradation of IκBα, indicating activation of the NF-κB pathway. 

Mao et al., 2023; Meier-Soelch et al., 2021; Xia and Tang 2023 

No 

 

Electrophoretic Mobility Shift Assay (EMSA)  

Measures DNA-binding activity of NF-κB to specific response elements. 

Meier-Soelch et al., 2021; Ramaswami and Hayden, 2015 

No 

 

ELISA  

Quantifies NF-κB DNA-binding activity in nuclear extracts. 

Meier-Soelch et al., 2021 

No 

JAK-STAT 

Western Blot  

Measures levels of JAK2 and STAT3 

Broughton and Burfoot, 2001; Mao et al., 2023 

No 

 

Electrophoretic Mobility Shift Assay (EMSA)  

Measures DNA-binding activity of STAT proteins to specific response elements. 

Broughton and Burfoot; Jiao et al., 2003 

No 

HSP 

Western Blot  

Measures levels of heat shock proteins such as HSP70 and HSP83. 

Kaur and Kaur, 2013; Thakur et al., 2019 

No 

 

ELISA  

Quantifies levels of specific heat shock proteins in cell extracts. 

Kaur and Kaur, 2013 

No 

 

Immunofluorescence  

Visualizes localization and expression of heat shock proteins in cells. 

Thakur et al., 2019 

No 

UPR 

Western Blot  

Measures levels of UPR markers such as PERK, IRE1α, ATF-6 

Sita et al., 2023; Kennedy et al., 2015; Zheng et al., 2019  

No 

 

qPCR and RT-PCR  

Quantifies mRNA levels of UPR-regulated genes such as ATF4 and CHOP. 

Kennedy et al., 2015; Zheng et al., 2019  

No 

 

Immunofluorescence  

Visualizes localization and expression of UPR markers in cells. 

Zheng et al., 2019 

No 

References

Arthur, J. S. and S. C. Ley (2013), “Mitogen-activated protein kinases in innate immunity”, Nature Reviews Immunology, Vol. 13/9, Springer, New York, https://doi.org/10.1038/nri3495   

 

Bamodu, O. A. et al. (2020), “Elevated PDK1 Expression Drives PI3K/AKT/MTOR Signaling Promotes Radiation-Resistant and Dedifferentiated Phenotype of Hepatocellular Carcinoma”, Cells, Vol. 9/3, Multidisciplinary Digital Publishing Institute, Basel, https://doi.org/10.3390/cells9030746  

 

Broughton, N. and M. S. Burfoot (2001), “JAK-mediated phosphorylation and activation of STAT signaling proteins. Analysis by phosphotyrosine blotting and EMSA”, Methods in molecular biology (Clifton, N.J.), Vol. 124, Springer, New York, https://doi.org/10.1385/1-59259-059-4:131  

 

Dai, X. and L. Shen (2022), “Advances and Trends in Omics Technology Development”, Frontiers in medicine, Vol. 9, Frontiers Media, Lausanne, https://doi.org/10.3389/fmed.2022.911861   

 

Dent, P., et al. (2003), “MAPK pathways in radiation responses”, Oncogene, Vol. 22/37, Springer, London, https://doi.org/10.1038/sj.onc.1206701  

 

Er, H. et al. (2022), “Acute and Chronic Exposure to 900 MHz Radio Frequency Radiation Activates p38/JNK-mediated MAPK Pathway in Rat Testis”, Reproductive sciences (Thousand Oaks, Calif.), Vol. 29/5, Springer, New York, https://doi.org/10.1007/s43032-022-00844-y  

 

Glaviano, A., et al. (2023). “PI3K/AKT/mTOR signaling transduction pathway and targeted therapies in cancer”, Molecular cancer, Vol. 22/1, Springer, London, https://doi.org/10.1186/s12943-023-01827-6Hu  

 

Grootjans, J. et al. (2016), “The unfolded protein response in immunity and inflammation”, Nature reviews. Immunology, Vol. 16/8, Springer, London, https://doi.org/10.1038/nri.2016.62   

Hetz, C., K. Zhang and R. J. Kaufman (2020), “Mechanisms, regulation and functions of the unfolded protein response”, Nature reviews. Molecular cell biology, Vol 21/8, Springer, London, https://doi.org/10.1038/s41580-020-0250-z  

 

Hu, S. et al. (2019), “Ganoderma lucidum polysaccharide inhibits UVB-induced melanogenesis by antagonizing cAMP/PKA and ROS/MAPK signaling pathways”, Journal of cellular physiology, Vol. 234/5, John Wiley & Sons, Ltd., Hoboken, https://doi.org/10.1002/jcp.27492   

 

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Event: 1492: Tissue resident cell activation

Short Name: Tissue resident cell activation

Key Event Component

Process Object Action
cell activation involved in immune response increased

AOPs Including This Key Event

Biological Context

Level of Biological Organization
Cellular

Domain of Applicability

Taxonomic Applicability
Term Scientific Term Evidence Links
human Homo sapiens NCBI
Macaca fascicularis Macaca fascicularis NCBI
rat Rattus norvegicus NCBI
mouse Mus musculus NCBI
zebrafish Danio rerio NCBI
Life Stage Applicability
Life Stage Evidence
All life stages

Extend to at least invertebrates

Not to plants and not to single-celled organisms

BRAIN:

Tissue resident activation is observed in human, monkey, rat, mouse, and zebrafish, in association with neurodegeneration or following toxicant exposure. Some references (non-exhaustive list) are given below for illustration:

Human: Vennetti et al., 2006

Monkey (Macaca fascicularis): Charleston et al., 1994, 1996

Rat: Little et al., 2012; Zurich et al., 2002; Eskes et al., 2002

Mouse: Liu et al., 2012

Zebrafish: Xu et al., 2014.

LIVER:

Human: Su et al., 2002; Kegel et al., 2015; Boltjes et al.,2014

Rat: Luckey and Peterson,2001

Mouse: Dalton t al., 2009

Taxonomic applicability: Tissue resident activation is observed in human, monkey, rat, mouse, and zebrafish, in association with neurodegeneration or following toxicant exposure. (Vennetti et al., 2006; Charleston et al., 1994, 1996; Little et al., 2012; Zurich et al., 2002; Eskes et al., 2002; Liu et al., 2012; Xu et al., 2014, Su et al., 2002; Kegel et al., 2015; Boltjes et al.,2014, Luckey and Peterson,2001, Dalton t al., 2009).  

Life stage applicability: This key event is mainly applicable to all life stages most evidence is derived from adult models (Betlazar et al., 2016; Paladini et al., 2021). 

Sex applicability: This key event is not sex specific (Betlazar et al., 2016; Paladini et al., 2021). 

Evidence for perturbation by a prototypic stressor: Current literature provides ample evidence of tissue resident cell activation being induced by ionizing radiation (Allen et al., 2020; Krukowski et al., 2018; Parihar et al., 2020; Parihar et al., 2018; Parihar et al., 2016; Poulose et al., 2011; Raber et al., 2019; Sumam et al., 2013). 

Key Event Description

Tissue resident cell activation is considered as a hallmark of inflammation irrespective of the tissue type. Strategically placed cells within tissues respond to noxious stimuli, thus regulating the recruitment of neutrophil and the initiation and resolution of inflammation (Kim and Luster, 2015). Examples for these cells are resident immune cells, parenchymal cells, vascular cells, stromal cells, or smooth muscle cells. These cells may be specific for a certain tissue, but they have a common tissue-independent role. 

Under healthy conditions there is a homeostatic state, characterized as a generally quiescent cellular milieu. Various danger signals or alarmins that are involved in induction of inflammation like pathogen-associated molecular pattern molecules (PAMPs) and damage-associated molecular pattern molecules (DAMPs) activate these resident cells in affected tissues. 

Examples of well-characterized DAMPs (danger signals or alarmins) (Saïd-Sadier and Ojcius, 2012; Roh and Sohn, 2018; Dukay et al., 2019) 

DAMPs 

Receptors 

Outcome of receptor ligation 

  

Extracellular nucleotides (ATP, ADP, adenosine) 

PI, P2X and P2Y receptors (ATP, ADP); Al, A2A, A2B 

and A3 receptors 

(adenosine) 

Dendritic cell (DC) maturation, chemotaxis, secretion of cytokines (IL-1β, IL-18), inflammation 

Extracellular heat shock proteins 

CD14, CD91, scavenger 

receptors, TLR4, TLR2, CD40 

DC maturation, cytokine induction, DC, migration to lymph nodes 

  

Extracellular HMGB1 

  

RAGE, TLR2, TLR4 

Chemotaxis, cytokine induction, DC 

activation, neutrophil recruitment, inflammation, activation of immune cells 

Uric acid crystals 

CD14, TLR2, TLR4 

DC activation, cytokine induction, 

neutrophil recruitment, gout induction 

Oxidative stress 

Intracellular redox- 

sensitive proteins 

Cell death, release of endogenous 

DAMPs, inflammation 

Laminin 

Integrins 

Neutrophil recruitment, chemotaxis 

S100 proteins or 

calgranulins 

RAGE 

Neutrophil recruitment, chemotaxis, 

cytokine secretion, apoptosis 

Hyaluronan 

TLR2, TLR4, CD44 

DC maturation, cytokine production, 

adjuvant activity 

Heat shock proteins (HSPs) 

Scavenger receptors, TLR2, TLR4 

Inflammation, cytokine production 

 

 

Activation refers to a phenotypic modification of the resident cells that includes alterations in their secretions, activation of biosynthetic pathways, production of pro-inflammatory proteins and lipids, and morphological changes. While these represent a pleiotropic range of responses that can vary with the tissue, there are a number of common markers or signs of activation that are measurable. 

Examples of Common markers are 

  •  CD11b 

  •  Iba1 

  •  GFAP  CD68  CD86 

  •  Mac-1  NF-kB  AP-1 

  •  Jnk 

  •  P38/MAPK 

These described commonalities allow the use of this KE as a hub KE in the AOP network. However, despite the similarities in the inflammatory process, the type of reactive cells and the molecules triggering their reactivity may be tissue-specific. Therefore, for practical reasons, a tissue specific description of the reactive cells and of the triggering factors is necessary in order to specify in a tissue-specific manner, which cell should be considered and what should be measured. 

 

Brain 

The most easily detectable feature of brain inflammation or neuroinflammation is activation of microglial cells and astrocytes. It is evidenced by changes in shape, increased expression of certain antigens, and accumulation and proliferation of the glial cells in affected regions (Aschner, 1998; Graeber & Streit, 1990; Monnet-Tschudi et al, 2007; Streit et al, 1999; Kraft and Harry, 2011; Claycomb et al., 2013). Upon stimulation by cytokines, chemokines or inflammogens (e.g. from pathogens or from damaged neurons), both glial cell types activate inflammatory signaling pathways, which result in increased expression and/or release of inflammatory mediators such as cytokines, eicosanoids, and metalloproteinases (Dong & Benveniste, 2001) (cf KE: pro- inflammatory mediators, increased), as well as in the production of reactive oxygen species (ROS) and nitrogen species (RNS) (Brown & Bal-Price, 2003). Different types of activation states are possible for microglia and astrocytes, resulting in pro- inflammatory or anti-inflammatory signaling, and other cellular functions (such as phagocytosis) (Streit et al., 1999; Nakajima and Kohsaka, 2004). Therefore, neuroinflammation can have both neuroprotective/neuroreparative and neurodegenerative consequences (Carson et al., 2006; Monnet-Tschudi et al, 2007; Aguzzi et al., 2013 ; Glass et al., 2010). Under normal physiological conditions, microglial cells survey the nervous system for neuronal integrity (Nimmerjahn et al, 2005) and for invading pathogens (Aloisi, 2001; Kreutzberg, 1995; Kreutzberg, 1996; Rivest, 2009). They are the first type of cell activated (first line of defense), and can subsequently induce astrocyte activation (Falsig, 2008). Two distinct states of microglial activation have been described (Gordon, 2003; Kigerl et al, 2009; Maresz et al, 2008; Mosser & Edwards, 2008; Perego et al; Ponomarev et al, 2005): The M1 state is classically triggered by interferon-gamma and/or other pro-inflammatory cytokines, and this state is characterized by increased expression of integrin alpha M (Itgam) and CD86, as well as the release of pro-inflammatory cytokines (TNF-alpha, IL- 1beta, IL-6), and it is mostly associated with neurodegeneration. The M2 state is triggered by IL-4 and IL-13 (Maresz et al, 2008; Perego et al, 2011; Ponomarev et al, 2007) and induces the expression of mannose receptor 1 (MRC1), arginase1 (Arg 1) and Ym1/2; it is involved in repair processes. The activation of astrocytes by microglia-derived cytokines or TLR agonists resembles the microglial M1 state (Falsig 2006). Although classification of the M1/M2 polarization of microglial cells may be considered as a simplification of authentic microglial reaction states (Ransohoff, 2016), a similar polarization of reactive astrocytes has been described recently Liddlelow et al., 2017): Interleukin-1 alpha (IL-1a), TNF and subcomponent q (C1q) released by activated microglial cells induce A1-reactive astrocytes, which lose the ability to promote neuronal survival, outgrowth, synaptogenesis and phagocytosis and induce the death of neurons and oligodendrocytes. 

How it is Measured or Detected

Measurement targets are cell surface and intracellular markers; the specific markers may be cell and species-specific. 

Available methods include cytometry, immunohistochemistry, gene expression sequencing; western blotting, ELISA, and functional assays. 

  

BRAIN 

Neuroinflammation, i.e. the activation of glial cells can be measured by quantification of cellular markers (most commonly), or of released mediators (less common). As multiple activation states exist for the two main cell types involved, it is necessary to measure several markers of neuroinflammation: 

Microglial activation can be detected based on the increased numbers of labeled microglia per volume element of brain tissue (due to increase of binding sites, proliferation, and immigration of cells) or on morphological changes. A specific microglial marker, used across different species, is CD11b. Alternatively various specific carbohydrate structures can be stained by lectins (e.g. IB4). Beyond that, various well-established antibodies are available to detect microglia in mouse tissue (F4/80), phagocytic microglia in rat tissue (ED1) or more generally microglia across species (Iba1). Transgenic mice are available with 

 

fluorescent proteins under the control of the CD11b promoter to easily quantify microglia without the need for specific stains. 

The most frequently used astrocyte marker is glial fibrillary acidic protein, GFAP (99% of all studies) (Eng et al., 2000). This protein is highly specific for astrocytes in the brain, and antibodies are available for immunocytochemical detection. In neuroinflammatory brain regions, the stain becomes more prominent, due to an upregulation of the protein, a shape change/proliferation of the cells, and/or better accessibility of the antibody. Various histological quantification approaches can be used. Occasionally, alternative astrocytic markers, such as vimentin of the S100beta protein, have been used for astrocyte staining (Struzynska et al., 2007). Antibodies for complement component 3 (C3), the most characteristic and highly upregulated marker of A1 neurotoxic reactive astrocytes are commercially available. 

All immunocytochemical methods can also be applied to cell culture models. 

In patients, microglial accumulation can be monitored by PET imaging, using [11C]-PK 11195 as a microglial marker (Banati et al., 2002). 

Activation of glial cells can be assessed in tissue or cell culture models also by quantification of sets of M1/M2 phenotype markers. This can for instance be done by PCR quantification, immunocytochemistry, immunoblotting. 

 Itgam, CD86 expression as markers of M1 microglial phenotype  Arg1, MRC1, as markers of M2 microglial phenotype 

(for descriptions of techniques, see Falsig 2004; Lund 2006 ; Kuegler 2010; Monnet-Tschudi et al., 2011; Sandström et al., 2014; von Tobel et al., 2014) 

LIVER: 

Kupffer cell activation can be measured by means of expressed cytokines, e.g. tissue levels of TNF-a [Vajdova et al,2004], IL-6 expression, measured by immunoassays or Elisa (offered by various companies), soluble CD163 [Grønbaek etal., 2012; Møller etal.,2012] or increase in expression of Kupffer cell marker genes such as Lyz, Gzmb, and Il1b, (Genome U34A Array, Affymetrix); [Takahara et al.,2006] 

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Kuegler PB, Zimmer B, Waldmann T, Baudis B, Ilmjärv S, Hescheler J, Gaughwin P, Brundin P, Mundy W, Bal-Price AK, Schrattenholz A, Krause KH, van Thriel C, Rao MS, Kadereit S, Leist M. Markers of murine embryonic and neural stem cells, neurons and astrocytes: reference points for developmental neurotoxicity testing. ALTEX. 2010;27(1):17-42 

Kreutzberg GW (1995) Microglia, the first line of defence in brain pathologies. Arzneimttelforsch 45: 357-360 Kreutzberg GW (1996) Microglia : a sensor for pathological events in the CNS. Trends Neurosci 19: 312-318 

Liddelow SA, Guttenplan KA, Clarke LE, Bennett FC, Bohlen CJ, Schirmer L, et al. 2017. Neurotoxic reactive astrocytes are induced by activated microglia. Nature 541(7638): 481-487. 

Little AR, Miller DB, Li S, Kashon ML, O'Callaghan JP. 2012. Trimethyltin-induced neurotoxicity: gene expression pathway analysis, q-RT-PCR and immunoblotting reveal early effects associated with hippocampal damage and gliosis. Neurotoxicol Teratol 34(1): 72-82. 

Liu Y, Hu J, Wu J, Zhu C, Hui Y, Han Y, et al. 2012. alpha7 nicotinic acetylcholine receptor-mediated neuroprotection against dopaminergic neuron loss in an MPTP mouse model via inhibition of astrocyte activation. J Neuroinflammation 9: 98. 

Lund S, Christensen KV, Hedtjärn M, Mortensen AL, Hagberg H, Falsig J, Hasseldam H, Schrattenholz A, Pörzgen P, Leist M. The dynamics of the LPS triggered inflammatory response of murine microglia under different culture and in vivo conditions. J Neuroimmunol. 2006 Nov;180(1-2):71-87. 

Maresz K, Ponomarev ED, Barteneva N, Tan Y, Mann MK, Dittel BN (2008) IL-13 induces the expression of the alternative activation marker Ym1 in a subset of testicular macrophages. J Reprod Immunol 78: 140-148 

 

Monnet-Tschudi F, Zurich MG, Honegger P (2007) Neurotoxicant-induced inflammatory response in three-dimensional brain cell cultures. Hum Exp Toxicol 26: 339-346 

Monnet-Tschudi, F., A. Defaux, et al. (2011). "Methods to assess neuroinflammation." Curr Protoc Toxicol Chapter 12: Unit12 19. 

Mosser DM, Edwards JP (2008) Exploring the full spectrum of macrophage activation. Nat Rev Immunol 8: 958-969 

Nakajima K, Kohsaka S. 2004. Microglia: Neuroprotective and neurotrophic cells in the central nervous system. Current Drug Targets-Cardiovasc & Haematol Disorders 4: 65-84. 

Perego C, Fumagalli S, De Simoni MG (2011) Temporal pattern of expression and colocalization of microglia/macrophage phenotype markers following brain ischemic injury in mice. J Neuroinflammation 8: 174 

Ponomarev ED, Maresz K, Tan Y, Dittel BN (2007) CNS-derived interleukin-4 is essential for the regulation of autoimmune inflammation and induces a state of alternative activation in microglial cells. J Neurosci 27: 10714-10721 

Ponomarev ED, Shriver LP, Maresz K, Dittel BN (2005) Microglial cell activation and proliferation precedes the onset of CNS autoimmunity. J Neurosci Res 81: 374-389 

Ransohoff RM. 2016. A polarizing question: do M1 and M2 microglia exist? Nat Neurosci 19(8): 987-991. 

Sandstrom von Tobel, J., D. Zoia, et al. (2014). "Immediate and delayed effects of subchronic Paraquat exposure during an early differentiation stage in 3D-rat brain cell cultures." Toxicol Lett. DOI : 10.1016/j.toxlet.2014.02.001 

Struzynska L, Dabrowska-Bouta B, Koza K, Sulkowski G (2007) Inflammation-Like Glial Response in Lead-Exposed Immature Rat Brain. Toxicol Sc 95:156-162 

von Tobel, J. S., P. Antinori, et al. (2014). "Repeated exposure to Ochratoxin A generates a neuroinflammatory response, characterized by neurodegenerative M1 microglial phenotype." Neurotoxicology 44C: 61-70. 

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LIVER: 

  

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Event: 2097: Increase, Pro-Inflammatory Mediators

Short Name: Increase, Pro-Inflammatory Mediators

Key Event Component

Process Object Action
inflammatory response increased

AOPs Including This Key Event

Biological Context

Level of Biological Organization
Tissue

Domain of Applicability

Taxonomic Applicability
Term Scientific Term Evidence Links
human Homo sapiens Low NCBI
rat Rattus norvegicus Low NCBI
mouse Mus musculus Low NCBI
Life Stage Applicability
Life Stage Evidence
Not Otherwise Specified Moderate
Sex Applicability
Sex Evidence
Mixed Moderate

Taxonomic applicability: The inflammatory response and increase of the pro-inflammatory mediators has been observed across species from simple invertebrates such as Daphnia to higher order vertebrates (Weavers & Martin, 2020).  

Life stage applicability: This key event is not life stage specific (Kalm et al., 2013; Veeraraghan et al., 2011; Hladik & Tapio, 2016).  

Sex applicability:  Most studies conducted were on male models, although sex-dependent differences in pro-inflammatory markers have been previously reported (Cekanaviciute et al., 2018; Parihar et al., 2020).  

Evidence for perturbation by a prototypic stressor: There is evidence of the increase of pro-inflammatory mediators following perturbation from a variety of stressors including exposure to ionizing radiation. (Abdel-Magied et al., 2019; Cho et al., 2017; Gaber et al., 2003; Ismail et al., 2016; Kim et al. 2002; Lee et al., 2010; Parihar et al., 2018) 

Key Event Description

(Adapted from KE 1493 - in blue)

Inflammatory mediators are soluble, diffusible molecules that act locally at the site of tissue damage and infection, and at more distant sites. They can be divided into exogenous and endogenous mediators. 

Exogenous mediators of inflammation are bacterial products or toxins like endotoxin or lipopolysaccharides (LPS). Endogenous mediators of inflammation are produced from within the (innate and adaptive) immune system itself, as well as other systems. They can be derived from molecules that are normally present in the plasma in an inactive form, such as peptide fragments of some components of complement, coagulation, and kinin systems. Or they can be released at the site of injury by a number of cell types that either contain them as preformed molecules within storage granules, e.g. histamine, or which can rapidly switch on the machinery required to synthesize the mediators. 

Pro-inflammatory mediators can have dual properties of anti-inflammatory and pro-inflammatory effects, dysregulation of the balance can lead to chronic inflammation which is implicated in many diseases such as cardiovascular diseases, neurodegenerative diseases or cancer

Examples of pro-inflammatory mediators are provided below in Table 1. 

Table 1: a non-exhaustive list of examples for pro-inflammatory mediators 

Classes of inflammatory mediators 

Examples 

Pro-inflammatory cytokines 

TNF- α, Interleukins (IL-1, IL-6, IL-8), Interferons (IFN-γ), chemokines (CXCL, CCL, GRO-α, MCP-1), GM-CSF 

Prostaglandins 

PGE2 

Bioactive peptides 

Bradykinin 

Vasoactive amines 

histamine, serotonin 

Reactive oxygen species (ROS) 

O2-, H2O2 

Reactive nitrogen species (RNS) 

NO, iNOS 

The increased production of pro-inflammatory mediators can have negative consequences on the parenchymal cells leading even to cell death, as described for TNF-a or peroxynitrite on neurons (Brown and Bal-Price, 2003). Along with TNF-α, IL-1β and IL-6 have been shown to exhibit negative consequences on neurogenesis and neuronal precursor cell proliferation when overexpressed. IFN-γ  is also associated with neuronal damage, although it is not as extensively studied compared to TNF-α, IL-1β and IL-6. These cytokines are normally involved in brain homeostasis and maintaining tissue repair following an injury, although it can have negative consequences (Fan & Pang, 2017). In addition, via a feedback loop, they can act on the reactive resident cells thus maintaining or exacerbating their reactive state; and by modifying elements of their signalling pathways, they can favour the M1 phenotypic polarization and the chronicity of the inflammatory process (Taetzsch et al., 2015).  

Studies show that the dysregulation of pro-inflammatory mediators can influence both cancer and non-cancer outcomes. Excessive/persistent pro-inflammatory signaling due to injury or exposure to chronic exposures can create an environment conducive to cellular transformation, proliferation. In autoimmune diseases, aberrant immune responses driven by pro-inflammatory cytokines like IL-6 and TNF-α lead to chronic inflammation, tissue damage, and organ dysfunction. Neurodegenerative disorders, such as Alzheimer's disease, involve dysregulated pro-inflammatory mediators like IL-1β and TNF-α, contributing to neuronal degeneration. Basically, this event occurs equally in various tissues and does not require tissue-specific descriptions. Nevertheless, there are some specificities such as the release of glutamate by brain reactive glial cells (Brown and Bal-Price, 2003; Vesce et al., 2007). The differences may rather reside in the type of insult favouring the increased expression and/or release of a specific class of inflammatory mediators, as well the time after the insult reflecting different stages of the inflammatory process. For these reasons, the analyses of the changes of a battery of inflammatory mediators rather than of a single one is a more adequate measurement of this KE. 

 

How it is Measured or Detected

Listed below are common methods for detecting the KE, however there may be other comparable methods that are not listed. 

Assay 

Reference 

Description 

OECD Approved Assay 

  • RT-qPCR 

  • Q-PCR 

(Veremeyko et al., 2012; Alwine et al, 1977; Forlenza et al., 2012) 

Measures mRNA expression of cytokines, chemokines and inflammatory markers  

No 

Immunoblotting (western blotting) 

(Lee et al., 2008) 

Uses antibodies specific to proteins of interest, can used to detect presence of pro-inflammatory mediators in samples of cell or tissue lysate 

No 

Whole blood stimulation assay 

(Thurm & Halsey, 2005) 

 Detects inflammatory cytokines in blood 

No 

Imaging tests 

(Rollins & Miskolci, 2014) 

A qualitative technique using a cytokine specific antibodies and fluorophores can be used to visualize expression patterns, subcellular location of the target and protein-protein interactions.  

Common examples include double immunofluorescence confocal microscopy or other molecular imaging modalities. 

No 

Flow-cytometry 

(Karanikas et al., 2000) 

Detects the intracellular cytokines with stimulation. 

No 

Immunoassays (ex. enzyme-linked immunosorbent assay (ELISA), enzyme-linked immunospot (ELISpot), radioimmunoassay) 

(Amsen et al., 2009; Engvall & Perlmann, 1972; Ji & Forsthuber, 2016; Goldsmith, 1975) 

Plate based assay technique using antibodies to detect presence of a protein in a liquid sample.  

Can be used to identify presence of an inflammatory cytokine of interest especially when in low concentrations.  

No 

Inflammatory cytokine arrays 

 

(Amsen et al., 2009) 

 

Similar to the ELISA, except using a membrane-based rather than plate-based approach. Can be used to measure multiple cytokine targets concurrently.  

No 

Immunohistochemistry (IHC) 

(Amsen et al., 2009; Coons et al., 1942) 

Immobilized tissue or cell cultures are stained using antibodies for specificity of ligands of interest. Versions of the assays can be used to visualize localization of inflammatory cytokines.  

No 

 

References

Abdel-Magied, N., S. M., Shedid and Ahmed, A. G. (2019), “Mitigating effect of biotin against irradiation-induced cerebral cortical and hippocampal damage in the rat brain tissue”, Environmental Science and Pollution Research, Vol. 26/13, Springer, London, https://doi.org/10.1007/S11356-019-04806-X.   

Alwine, J. C., D. J. Kemp and G. R. Stark (1977), “Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes”, Proceedings of the National Academy of Sciences of the United States of America, Vol. 74/12, United States National Academy of Sciences, Washington, D.C., https://doi.org/10.1073/pnas.74.12.5350 

Amsen, D., de Visser, K. E., and Town, T. (2009), “Approaches to determine expression of inflammatory cytokines”, in Inflammation and Cancer, Humana Press, Totowa, https://doi.org/10.1007/978-1-59745-447-6_5 

Brown, G. C., and A. Bal-Price (2003), “Inflammatory neurodegeneration mediated by nitric oxide, glutamate, and mitochondria”, Molecular Neurobiology, Vol. 27/3, Springer, London, https://doi.org/10.1385/MN:27:3:325 

Cekanaviciute, E., S. Rosi and S. Costes. (2018), "Central Nervous System Responses to Simulated Galactic Cosmic Rays", International Journal of Molecular Sciences, Vol. 19/11, Multidisciplinary Digital Publishing Institute (MDPI) AG, Basel,  https://doi.org/10.3390/ijms19113669.  

Cho, H. J. et al. (2017), “Role of NADPH Oxidase in Radiation-induced Pro-oxidative and Pro-inflammatory Pathways in Mouse Brain”, International Journal of Radiation Biology, Vol. 93/11, Informa, London, https://doi.org/10.1080/09553002.2017.1377360.   

Coons, A. H. et al. (1942), “The Demonstration of Pneumococcal Antigen in Tissues by the Use of Fluorescent Antibody”, The Journal of Immunology, Vol. 45/3, American Association of Immunologists, Minneapolis, pp. 159-169 

Engvall, E., and P. Perlmann (1972), “Enzyme-Linked Immunosorbent Assay, Elisa”, The Journal of Immunology, Vol. 109/1, American Association of Immunologists, Minneapolis, pp. 129-135 

Fan, L. W. and Y. Pang. (2017), "Dysregulation of neurogenesis by neuroinflammation: Key differences in neurodevelopmental and neurological disorders", Neural Regeneration Research, Vol. 12/3, Wolters Kluwer, Alphen aan den Rijn, https://doi.org/10.4103/1673-5374.202926.  

Forlenza, M. et al. (2012), “The use of real-time quantitative PCR for the analysis of cytokine mRNA levels” in Cytokine Protocols, Springer, New York, https://doi.org/10.1007/978-1-61779-439-1_2  

Gaber, M. W. et al. (2003), “Differences in ICAM-1 and TNF-alpha expression between large single fraction and fractionated irradiation in mouse brain”, International Journal of Radiation Biology, Vol. 79/5, Informa, London, https://doi.org/10.1080/0955300031000114738.   

Goldsmith, S. J. (1975), "Radioimmunoassay: Review of basic principles", Seminars in Nuclear Medicine, Vol. 5/2, https://doi.org/10.1016/S0001-2998(75)80028-6. 

Hladik, D. and S. Tapio. (2016), "Effects of ionizing radiation on the mammalian brain", Mutation Research/Reviews in Mutation Research, Vol. 770, Elsevier B. b., Amsterdam, https://doi.org/10.1016/j.mrrev.2016.08.003.  

Ismail, A. F. M., A.A.M. Salem and M.M.T. Eassawy (2016), “Modulation of gamma-irradiation and carbon tetrachloride induced oxidative stress in the brain of female rats by flaxseed oil”, Journal of Photochemistry and Photobiology B: Biology, Vol. 161, Elsevier, Amsterdam, https://doi.org/10.1016/J.JPHOTOBIOL.2016.04.031

Ji, N. and T. G. Forsthuber. (2014), "ELISPOT Techniques" (pp. 63–71), https://doi.org/10.1007/7651_2014_111. 

Kalm, M., K. Roughton and K. Blomgren. (2013), "Lipopolysaccharide sensitized male and female juvenile brains to ionizing radiation", Cell Death & Disease, Vol. 4/12, Nature Publishing Group, Berlin, https://doi.org/10.1038/cddis.2013.482. 

Karanikas, V. et al. (2000), “Flow cytometric measurement of intracellular cytokines detects immune responses in MUC1 immunotherapy”, Clinical Cancer Research, Vol. 6/3, American Association for Cancer Research, Philadelphia, pp. 829–837  

Kim, S. H. et al. (2002), “Expression of TNF-alpha and TGF-beta 1 in the rat brain after a single high-dose irradiation”, Journal of Korean Medical Science, Vol. 17/2, Korean Medical Association, Seoul, https://doi.org/10.3346/JKMS.2002.17.2.242.   

Lee, J. W. et al. (2008), “Neuro-inflammation induced by lipopolysaccharide causes cognitive impairment through enhancement of beta-amyloid generation”, Journal of Neuroinflammation, Vol. 5/1, BioMed Central, London, https://doi.org/10.1186/1742-2094-5-37 

Lee, W. H. et al. (2010), “Irradiation induces regionally specific alterations in pro-inflammatory environments in rat brain”, International Journal of Radiation Biology, Vol. 86/2, Informa, London, https://doi.org/10.3109/09553000903419346. 

Parihar, V. K. et al. (2018), “Persistent nature of alterations in cognition and neuronal circuit excitability after exposure to simulated cosmic radiation in mice”, Experimental Neurology, Vol. 305, Elsevier, Amsterdam, https://doi.org/10.1016/J.EXPNEUROL.2018.03.009. 

Parihar, V. K. et al. (2020), "Sex-Specific Cognitive Deficits Following Space Radiation Exposure", Frontiers in Behavioral Neuroscience, Vol. 14, https://doi.org/10.3389/fnbeh.2020.535885. 

Rollins, J. and V. Miskolci (2014), “Immunofluorescence and subsequent confocal microscopy of intracellular TNF in human neutrophils” in Cytokines Bioassays, Springer, London, https://doi.org/10.1007/978-1-4939-0928-5_24 

Taetzsch, T. et al. (2015), "Redox regulation of NF-κB p50 and M1 polarization in microglia", Glia, Vol. 63/3, John Wiley & Sons, Hoboken, https://doi.org/10.1002/glia.22762. 

Thurm, C. W. and J. F. Halsey (2005), “Measurement of Cytokine Production Using Whole Blood”, in Current Protocols in Immunology, John Wiley & Sons, Inc., Hoboken, https://doi.org/10.1002/0471142735.im0718bs66 

Veeraraghavan, J. et al. (2011), "Low-dose γ-radiation-induced oxidative stress response in mouse brain and gut: Regulation by NFκB–MnSOD cross-signaling", Mutation Research/Genetic Toxicology and Environmental Mutagenesis, Vol. 718/1–2, Elsevier, Amsterdam, https://doi.org/10.1016/j.mrgentox.2010.10.006. 

Veremeyko, T. et al. (2012), “Detection of microRNAs in microglia by real-time PCR in normal CNS and during neuroinflammation”, Journal of Visualized Experiments: JoVE, Vol. 65, MyJove Corporation, Cambridge, https://doi.org/10.3791/4097 

Vesce, S. et al. (2007), “Glutamate release from astrocytes in physiological conditions and in neurodegenerative disorders characterized by neuroinflammation”, International Review of Neurobiology, Vol. 82, Elsevier, Amsterdam, https://doi.org/10.1016/S0074-7742(07)82003-4 

Weavers, H. and P. Martin (2020), “The cell biology of inflammation: From common traits to remarkable immunological adaptations”, Journal of Cell Biology, Vol. 219, Rockefeller University Press, New York, https://doi.org/10.1083/jcb.202004003 

 

Event: 2098: Increase, Abnormal Neural Remodeling

Short Name: Abnormal Neural Remodeling

Key Event Component

Process Object Action
neurogenesis decreased
demyelination increased
neuron death increased

AOPs Including This Key Event

Biological Context

Level of Biological Organization
Tissue

Domain of Applicability

Taxonomic Applicability
Term Scientific Term Evidence Links
dog Canis lupus familiaris Low NCBI
rat Rattus norvegicus Moderate NCBI
mouse Mus musculus Moderate NCBI
Life Stage Applicability
Life Stage Evidence
Juvenile Low
Adult Moderate
Sex Applicability
Sex Evidence
Male Moderate
Female Low
Unspecific Low

Taxonomic applicability: The ability to process complex spatiotemporal information through neuronal networking is a fundamental process underlying the behavior of all higher organisms. The most studied are the neuronal networks of vertebrates such as rodents (Cekanaviciute et al., 2018) and primates (Wang and Arnsten, 2015). https://pubmed.ncbi.nlm.nih.gov/26876924/Invertebrates hold neural circuitries in various degrees of complexity and there are studies describing how neurons are organized into functional networks to generate behaviour (Wong and Wong, 2004; Marder, 1994).  

Life stage applicability: This key event is applicable to all life stages; most evidence is derived from studies in adults (Cekanaviciute et al., 2018; Hladik & Tapio, 2016). 

Sex applicability: This key event is not sex specific (Hladik & Tapio, 2016). 

Evidence for perturbation by a prototypic stressor: Current literature provides ample evidence of neural remodeling being induced by stressors including ionizing radiation (Allen et al., 2015; Cekanaviciute et al., 2018; J. R. Fike et al., 1984; John R. Fike et al., 1988; Hladik & Tapio, 2016; Kiffer et al., 2020; Mizumatsu et al., 2003; Okamoto et al., 2009; Vipan K. Parihar et al., 2016; Vipan K. Parihar; Rola et al., 2005; Tiller-Borcich et al., 1987). 

Key Event Description

(Adapted from KE: 618)

Abnormal neural remodeling is a normal process that allows for the encoding of new information and experiences, and it is essential in the functional and structural adaptation of the central nervous system (CNS) (Wang et al., 2010).  Remodeling of neural cells can be adaptive but stressors and stimuli that lead to persistent inflammation can degenerate brain cell types like neurons, dendrites, glial cells, astrocytes and oligodendrocytes (Hladik & Tapio, 2016; Makale et al., 2017). Abnormal neural remodeling can encompass a broad range of processes (Marc et al., 2003).  Key processes include changes in neurogenesis, synaptic plasticity, and myelination, which are all measurable. Neurogenesis involves the generation of new neurons from neural stem cells, primarily occurring in neurogenic niches such as the hippocampus (Hladik & Tapio, 2016). Synaptic plasticity refers to the ability of synapses to undergo structural and functional modifications in response to activity, facilitating learning and memory formation. This includes processes like long-term potentiation (LTP) and long-term depression (LTD), which enhances or weakens synaptic strength, respectively. Myelination, primarily mediated by oligodendrocytes in the CNS, involves the formation of myelin sheaths around axons, facilitating efficient signal transmission (Stadelmann et al., 2019).  

Exposure to environmental toxins or substances during critical developmental periods can negatively influence the many processes involved in abnormal neural remodeling. Prenatal exposure to neurotoxic substances, for instance, may disrupt fetal neurogenesis. Prolonged stress, hormonal imbalances, and the natural aging process can also contribute to abnormal  neural remodeling.  Studies show that the dendrites of neurons are an important structure for maintaining synaptic plasticity. Changes in dendritic spine density and structure, including decreases in dendritic branch points, length, and area, are correlated with changes in excitatory synaptic transmission strength which can impair brain function (Jandial et al., 2018; Auffret et al., 2009). Dendritic protein synthesis is also required for many types of long-term synaptic plasticity (Sutton & Schuman 2006). Changes to the levels of protein synthesis can greatly affect neuronal communication. When dendritic complexity decreases, there can be a decline in neurogenesis and an increase in neurodegeneration. Neurogenesis is the creation of mature cells from neural stem cells (NSCs) which are involved in learning and memory, and decreased neurogenesis can impair the brain’s function (Hladik & Tapio, 2016). Together these events provoke changes in synaptic plasticity and propagations of action potentials, ultimately leading to the disruption of neuronal signaling (Cekanaviciute et al., 2018). Other types of changes related to abnormal neural remodeling include demyelination of neurons and white matter necrosis which have been associated with altered brain function such as decreased long-term memory formation (Makale et al., 2017; Tomé et al., 2015).

How it is Measured or Detected

 

Method of Measurement 

References 

Description 

OECD-Approved Assay 

MRI Scan 

Jiang et al., 2014 

 Magnetic resonance imaging (MRI) is an imaging technique used to visualize organs and tissues in the body. MRI can be used to view demyelination. 

No 

Fluoro-Jade stain 

Schmued and Hopkins, 2000 

Detects and labels degenerating neurons. 

No 

3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H-tetrazolium bromide (MTT) Assay – colorimetric assay used to assess cell metabolic activity based on the reduction of (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide. 

Riss et al., 2004 

Cell viability and proliferation assays can be used to measure increased levels of neurodegeneration or decreased levels of neurogenesis. 

Yes 

Bromodeoxyuridine (BrdU) labeling  

Vallieres et al., 2002 

Staining method used to identify proliferating cells and measures neurogenesis. 

No 

SYNPLA 

Dore et al., 2020 

Synaptic proximity ligation assay (SYNPLA) is a technique that detects learning-induced synaptic plasticity. 

No 

ELISA 

Falsig et al., 2003; Lund et al., 2006; Monnet-Tschudi et al., 2011 

The enzyme-linked immunosorbent assay (ELISA) is a technique that detects and quantifies levels of macromolecules such as peptides, proteins, antibodies, and hormones. It can be used to detect specific molecules in neurons that represent loss in integrity such as PSD-95, synapsin 1 or drebrin. 

No 

Immunoassay/microscopy 

Falsig et al., 2003; Lund et al., 2006; Monnet-Tschudi et al., 2011 

Various methods that use the specificity of antigen-antibody binding for detection and quantification of target molecules such as PSD-95, synpasin 1, Ki-67 and drebrin. 

No 

Western Blot 

Yang and Mahmood, 2012 

Protein identification from a complex mixture after size separation, transfer to solid support and marking target protein. Specific markers include PSD-95, synpasin 1, Ki-67 and drebrin. 

No 

Golgi-Cox Method 

Zaqout and Kaindl, 2016 

Visualizes neuronal morphology in vivo. 

No 

Whole-cell electrophysiology 

Hill and Stephens, 2021 

Measures intracellular electrical properties by visualizing ionic currents. 

No 

Terminal deoxynucleotidyl transferase-mediated dUTP nick end-labeling (TUNEL) assay 

Kressel and Groscurth, 1994 

 

Apoptosis is detected with the TUNEL method to assay the endonuclease cleavage products by enzymatically end-labeling the DNA strand breaks.  

 

Yes 

References

Allen, A. R. et al. (2015), “56Fe Irradiation Alters Spine Density and Dendritic Complexity in the Mouse Hippocampus”, Radiation Research, Vol. 184/6, BioOne, Washington, https://doi.org/10.1667/RR14103.1. 

Alvarez, M. L. and S. C. Doné. (2014), “SYBR® Green and TaqMan® Quantitative PCR Arrays: Expression Profile of Genes Relevant to a Pathway or a Disease State” (pp. 321–359), Springer Nature, Berlin, https://doi.org/10.1007/978-1-4939-1062-5_27. 

Auffret, A. et al. (2009), “Age-Dependent Impairment of Spine Morphology and Synaptic Plasticity in Hippocampal CA1 Neurons of a Presenilin 1 Transgenic Mouse Model of Alzheimer’s Disease”, Journal of Neuroscience, Vol. 29/32, Society for Neuroscience, Washington, https://doi.org/10.1523/JNEUROSCI.1856-09.2009. 

Cekanaviciute, E., S. Rosi and S. V. Costes. (2018), “Central nervous system responses to simulated galactic cosmic rays”, International Journal of Molecular Sciences, Vol. 19/11, Multi-Disciplinary Digital Publishing Institute, Basel, https://doi.org/10.3390/ijms19113669. 

Chakraborti, A. et al. (2012), “Cranial Irradiation Alters Dendritic Spine Density and Morphology in the Hippocampus”, (P.J. Tofilon, 

 

Ed.) PloS ONE, Vol. 7/7, Public Library of Science, San Francisco, https://doi.org/10.1371/journal.pone.0040844. 

Dore, K. et al. (2020), “SYNPLA, a method to identify synapses displaying plasticity after learning”, Proceedings of the National Academy of Sciences, Vol. 117/6, Proceedings of the National Academy of Sciences, https://doi.org/10.1073/pnas.1919911117. 

Falsig, J., M. Latta and M. Leist. (2003), “Defined inflammatory states in astrocyte cultures: correlation with susceptibility towards CD95-driven apoptosis”, Journal of Neurochemistry, Vol. 88/1, John Wiley & Sons, Inc., Hoboken, https://doi.org/10.1111/j.1471- 4159.2004.02144.x. 

Fike, J. R. et al. (1984), “Computed Tomography Analysis of the Canine Brain: Effects of Hemibrain X Irradiation”, Radiation Research, Vol. 99/2, Allen Press, Lawrence, https://doi.org/10.2307/3576373. 

Fike, J. R. et al. (1988), “Radiation dose response of normal brain”, International Journal of Radiation Oncology, Biology, Physics, Vol. 14/1, Elsevier, Amsterdam, https://doi.org/10.1016/0360-3016(88)90052-1. 

Harris, K. and J. Stevens. (1989), “Dendritic spines of CA 1 pyramidal cells in the rat hippocampus: serial electron microscopy with reference to their biophysical characteristics”, The Journal of Neuroscience, Vol. 9/8, Society for Neuroscience, Washington, https://doi.org/10.1523/JNEUROSCI.09-08-02982.1989. 

Hill, C. L. and G. J. Stephens. (2021), “An Introduction to Patch Clamp Recording” (pp. 1–19), https://doi.org/10.1007/978-1-0716- 0818-0_1. 

Hladik, D. and S. Tapio. (2016), “Effects of ionizing radiation on the mammalian brain”, Mutation Research/Reviews in Mutation Research, Vol. 770, Elsevier B. b., Amsterdam, https://doi.org/10.1016/j.mrrev.2016.08.003. 

Kiffer, F. et al. (2020), “Late Effects of 1H + 16O on Short-Term and Object Memory, Hippocampal Dendritic Morphology and Mutagenesis”, Frontiers in Behavioral Neuroscience, Vol. 14, Frontiers Media S.A., https://doi.org/10.3389/fnbeh.2020.00096. 

Kressel, M. and P. Groscurth (1994), “Distinction of apoptotic and necrotic cell death by in situ labelling of fragmented DNA”, Cell and tissue research, Vol. 278/3, Nature, https://doi.org/10.1007/BF00331373. 

Kukurba, K. R. and S. B. Montgomery. (2015), “RNA Sequencing and Analysis”, Cold Spring Harbor Protocols, Vol. 2015/11, https://doi.org/10.1101/pdb.top084970. 

Jandial, R. et al. (2018), “Space–brain: The negative effects of space exposure on the central nervous system”, Surgical Neurology International, Vol. 9/1, https://doi.org/10.4103/sni.sni_250_17. 

Jiang, X. et al. (2014), “A GSK-3β Inhibitor Protects Against Radiation Necrosis in Mouse Brain”, International Journal of Radiation Oncology*Biology*Physics, Vol. 89/4, Elsevier, Amsterdam, https://doi.org/10.1016/j.ijrobp.2014.04.018. 

Lodish, H., et al. (2000). Overview of Neuron Structure and Function. https ://www.ncbi.nlm.nih.gov/books/NBK21535/ 

Lund, S. et al. (2006), “The dynamics of the LPS triggered inflammatory response of murine microglia under different culture and in vivo conditions”, Journal of Neuroimmunology, Vol. 180/1–2, Elsevier, Amsterdam, https://doi.org/10.1016/j.jneuroim.2006.07.007. 

Makale, M. T. et al. (2017), “Mechanisms of radiotherapy-associated cognitive disability in patients with brain tumours”, Nature reviews. Neurology, Vol. 13/1, 52–64. https://doi.org/10.1038/nrneurol.2016.185    

Marc, R. E., Jones, B. W., Watt, C. B., & Strettoi, E. (2003). Neural remodeling in retinal degeneration. *Progress in Retinal and Eye Research, 22*(5), 607-655. https://doi.org/10.1016/S1350-9462(03)00039-9.  

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Mizumatsu, S. et al. (2003), “Extreme sensitivity of adult neurogenesis to low doses of X-irradiation”, Cancer Research, Vol. 63/14. 

Monnet‐Tschudi, F. et al. (2011), “Methods to Assess Neuroinflammation”, Current Protocols in Toxicology, Vol. 50/1, John Wiley & Sons, Inc., Hoboken, https://doi.org/10.1002/0471140856.tx1219s50. 

Okamoto, M. et al. (2009), “Effect of radiation on the development of immature hippocampal neurons in vitro”, Radiation Research, Vol. 172/6, BioOne, Washington, https://doi.org/10.1667/RR1741.1. 

Parihar, V. K. et al. (2016), “Cosmic radiation exposure and persistent cognitive dysfunction”, Scientific Reports, Vol. 6/June, Nature Publishing Group, Berlin, https://doi.org/10.1038/srep34774. 

Parihar, V. K. et al. (2015), “What happens to your brain on the way to Mars”, Science Advances, Vol. ¼, American Association for the Advancement of Science, Washington, https://doi.org/10.1126/SCIADV.1400256. 

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Rola, R. et al. (2005), “High-LET radiation induces inflammation and persistent changes in markers of hippocampal neurogenesis”, Radiation Research (Volume 164, pp. 556–560), BioOne, Washington, https://doi.org/10.1667/RR3412.1. 

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Stadelmann, C., Timmler, S., Barrantes-Freer, A., & Simons, M. (2019). Myelin in the Central Nervous System: Structure, Function, and Pathology. Physiological Reviews, 99(3), 1381-1431. https://doi.org/10.1152/physrev.00031.2018  

Sutton, M. A. and E. M. Schuman. (2006), "Dendritic Protein Synthesis, Synaptic Plasticity, and Memory", Cell, Vol. 127/1, Elsevier, Amsterdam, https://doi.org/10.1016/j.cell.2006.09.014. 

Tiller-Borcich, J. K. et al. (1987), "Pathology of Delayed Radiation Brain Damage: An Experimental Canine Model", Radiation 

 

Event: 1635: Increase, DNA strand breaks

Short Name: Increase, DNA strand breaks

Key Event Component

Process Object Action
DNA Strand Break Deoxyribonucleic acid increased

AOPs Including This Key Event

Stressors

Name
Ionizing Radiation
Topoisomerase inhibitors
Radiomimetic compounds

Biological Context

Level of Biological Organization
Molecular

Domain of Applicability

Taxonomic Applicability
Term Scientific Term Evidence Links
human and other cells in culture human and other cells in culture NCBI
Life Stage Applicability
Life Stage Evidence
All life stages High
Sex Applicability
Sex Evidence
Unspecific High

Taxonomic applicability: DNA strand breaks are relevant to all species, including vertebrates such as humans, that contain DNA (Cannan & Pederson, 2016).  

Life stage applicability: This key event is not life stage specific as all life stages display strand breaks. However, there is an increase in baseline levels of DNA strand breaks seen in older individuals though it is unknown whether this change due to increased break induction or a greater retention of breaks due to poor repair (White & Vijg, 2016). 

Sex applicability: This key event is not sex specific as both sexes display evidence of strand breaks. In some cell types, such as peripheral blood mononuclear cells, males show higher levels of single strand breaks than females (Garm et al., 2012). 

Evidence for perturbation by a stressor: There are studies demonstrating that increased DNA strand breaks can result from exposure to multiple stressor types including ionizing & non-ionizing radiation, chemical agents, and oxidizing agents (EPRI, 2014; Hamada, 2014; Cencer et al., 2018; Cannan & Pederson, 2016; Yang et al., 1998).  

Key Event Description

DNA strand breaks are a type of damage resulting from the hydrolysis of phosphodiester groups in the backbone of DNA molecules (Gates, 2009) and can occur on a single strand (single strand breaks; SSBs) or both strands (double strand breaks; DSBs). SSBs arise when the sugar phosphate backbones connecting adjacent nucleotides in DNA are simultaneously hydrolyzed such that the hydrogen bonds between complementary bases are not able to hold the two strands together. DSBs are generated when both strands are simultaneously broken at sites that are sufficiently close to one another that base-pairing and chromatin structure are insufficient to keep the two DNA ends juxtaposed. As a consequence, the two DNA ends generated by a DSB can physically dissociate from one another, becoming difficult to repair and increasing the chance of inappropriate recombination with other sites in the genome (Jackson, 2002). SSB can turn into DSB if the replication fork stalls at the lesion leading to fork collapse. Strand breaks are intermediates in various biological events, including DNA repair (e.g., excision repair), as well as other normal cellular processes where DSBs act as genetic shufflers to generate genetic diversity for V(D)J recombination in lymphoid cells, and chromatin remodeling in both somatic cells and germ cells, and meiotic recombination in gametes. 

Strand breaks are intermediates in various biological events, including DNA repair (e.g., excision repair), V(D)J recombination in developing lymphoid cells and chromatin remodeling in both somatic cells and germ cells. The spectrum of damage can be complex, particularily if the stressor is from large amounts of deposited energy which can result in complex lesions and clustered damage defined as two or more oxidized bases, abasic sites or starnd breaks on opposing DNA strands within a few helical turns. These lesions are more difficult to repair and have been studied in many types of models (Barbieri et al., 2019 and Asaithamby et al., 2011). DSBs and complex lesions are of particular concern, as they are considered the most lethal and deleterious type of DNA lesion. If misrepaired or left unrepaired, DSBs may drive the cell towards genomic instability, apoptosis or tumorigenesis (Beir, 1999). 

How it is Measured or Detected

Please refer to the table below for details regarding these and other methodologies for detecting DNA DSBs. 

Method of Measurement  

References  

Description  

OECD Approved Method? 

Comet Assay (Single Cell Gel Eletrophoresis - Alkaline)  

Collins, 2004; Olive and Banath, 2006; Platel et al., 2011; Nikolova et al., 2017  

To detect SSBs or DSBs, single cells are encapsulated in agarose on a slide, lysed, and subjected to gel electrophoresis at an alkaline pH (pH >13); DNA fragments are forced to move, forming a "comet"-like appearance  

Yes 

γ-H2AX Foci Quantification - Flow Cytometry  

Rothkamm and Horn, 2009; Bryce et al., 2016  

Measurement of γ-H2AX immunostaining in cells by flow cytometry, normalized to total levels of H2AX  

No 

γ-H2AX Foci Quantification - Western Blot  

Burma et al., 2001; Revet et al., 2011  

Measurement of γ-H2AX immunostaining in cells by Western blotting, normalized to total levels of H2AX  

No 

γ-H2AX Foci Quantification - Microscopy  

Redon et al., 2010; Mah et al., 2010; Garcia-Canton et al., 2013  

Quantification of γ-H2AX immunostaining by counting γ-H2AX foci visualized with a microscope  

No 

γ-H2AX Foci Quantification - ELISA  

Ji et al., 2017  

Measurement of γ-H2AX in cells by ELISA, normalized to total levels of H2AX  

No 

Pulsed Field Gel Electrophoresis (PFGE)  

Ager et al., 1990; Gardiner et al., 1985; Herschleb et al., 2007; Kawashima et al., 2017  

To detect DSBs, cells are embedded and lysed in agarose, and the released DNA undergoes gel electrophoresis in which the direction of the voltage is periodically alternated; Large DNA fragments are thus able to be separated by size  

No 

The TUNEL (Terminal Deoxynucleotidyl Transferase dUTP Nick End Labeling) Assay  

Loo, 2011  

To detect strand breaks, dUTPs added to the 3’OH end of a strand break by the DNA polymerase terminal deoxynucleotidyl transferase (TdT) are tagged with a fluorescent dye or a reporter enzyme to allow visualization  

No 

In Vitro DNA Cleavage Assays using Topoisomerase  

Nitiss, 2012  

Cleavage of DNA can be achieved using purified topoisomerase; DNA strand breaks can then be separated and quantified using gel electrophoresis  

No 

PCR assay 

Figueroa‑González & Pérez‑Plasencia, 2017 

Assay of strand breaks through the observation of DNA amplification prevention. Breaks block Taq polymerase, reducing the number of DNA templates, preventing amplification 

No 

Sucrose density gradient centrifuge 

Raschke et al. 2009 

Division of DNA pieces by density, increased fractionation leads to lower density pieces, with the use of a sucrose cushion 

No 

Alkaline Elution Assay 

Kohn, 1991 

Cells lysed with detergent-solution, filtered through membrane to remove all but intact DNA 

No 

Unwinding Assay 

Nacci et al. 1992 

DNA is stored in alkaline solutions with DNA-specific dye and allowed to unwind following removal from tissue, increased strand damage associated with increased unwinding 

Yes 

STRIDE assay 

Zilio and Ulrich, 2021 

STRIDE (SensiTive Recognition of Individual DNA Ends) combines in situ nick translation with the proximity ligation assay (PLA) to detect single-strand breaks (sSTRIDE) or double-strand breaks (dSTRIDE). In this process, lesions labeled through nick translation with biotinylated nucleotides are identified by a PLA signal, which arises from the interaction of two anti-biotin antibodies from different species. 

 

No 

sBLISS 

Bouwmann et al. 2020 

sBLISS (in-suspension breaks labeling in situ and sequencing)  labels double-strand breaks (DSBs) in cells immobilized on glass coverslips, using double-stranded oligonucleotide adaptors that facilitate selective linear amplification through T7-mediated in vitro transcription (IVT), followed by next-generation sequencing (NGS) library preparation 

 

No 

References

Ager, D. D., et al. (1990). Measurement of radiation-induced DNA double-strand breaks by pulsed-field gel electrophoresis. Radiation research, 122/(2), 181–187. 

Anderson, D. & Laubenthal J. (2013), “Analysis of DNA Damage via Single-Cell Electrophoresis. In: Makovets S, editor. DNA Electrophoresis. Totowa.”, NJ: Humana Press. p 209-218. 

Asaithamby, A., B. Hu and D.J. Chen. (2011) “Unrepaired clustered DNA lesions induce chromosome breakage in human cells.” Proc Natl Acad Sci U S A 108(20): 8293-8298 . 

Barbieri, S., G. Babini, J. Morini et a l (2019). . Predicting DNA damage foci and their experimental readout with 2D microscopy: a unified approach applied to photon and neutron exposures. Scientific Reports 9(1): 14019 

Bouwman, B. et al. (2020), “Genome-wide detection of DNA double-strand breaks by in-suspension BLISS”, Nature protocols,.15/12, Springer Nature, London, https://doi.org/10.1038/s41596-020-0397-2  

Bryce, S. et al. (2016), “Genotoxic mode of action predictions from a multiplexed flow cytometric assay and a machine learning approach.”, Environ Mol Mutagen. 57:171-189. Doi: 10.1002/em.21996. 

Burma, S. et al. (2001), “ATM phosphorylates histone H2AX in response to DNA double-strand breaks.”, J Biol Chem, 276(45): 42462-42467. doi:10.1074/jbc.C100466200 

Cannan, W.J. and D.S. Pederson (2016), "Mechanisms and Consequences of Double-Strand DNA Break Formation in Chromatin.", Journal of Cellular Physiology, Vol.231(/1), Wiley, New York, https://doi.org/10.1002/jcp.25048.  

Cencer, C. et al. (2018), “PARP-1/PAR Activity in Cultured Human Lens Epithelial Cells Exposed to Two Levels of UVB Light”, Photochemistry and Photobiology, Vol.(94/1), Wiley-Blackwell, Hoboken, https://doi.org/10.1111/php.12814.  

Charlton, E. D. et al. (1989), “Calculation of Initial Yields of Single and Double Stranded Breaks in Cell Nuclei from Electrons, Protons, and Alpha Particles.”, Int. J. Radiat. Biol. 56(1): 1-19. doi: 10.1080/09553008914551141. 

Collins, R. A. (2004), “The Comet Assay for DNA Damage and Repair. Molecular Biotechnology.”, Mol Biotechnol. 26(3): 249-61. doi:10.1385/MB:26:3:249 

EPRI (2014), Epidemiology and mechanistic effects of radiation on the lens of the eye: Review and scientific appraisal of the literature, EPRI, California. 

Figueroa‑González, G. and C. Pérez‑Plasencia. (2017), “Strategies for the evaluation of DNA damage and repair mechanisms in cancer”, Oncology Letters, Vol.133(/6), Spandidos Publications, Athens, https://doi.org/10.3892/ol.2017.6002. 

Garcia-Canton, C. et al. (2013), “Assessment of the in vitro p-H2AX assay by High Content Screening asa novel genotoxicity test.”, Mutat Res. 757:158-166. Doi: 10.1016/j.mrgentox.2013.08.002 

Gardiner, K. et al. (1986), “Fractionation of Large Mammalian DNA Restriction Fragments Using Vertical Pulsed-Field Gradient Gel Electrophoresis.”, Somatic Cell and Molecular Genetics. 12(2): 185-95.Doi: 10.1007/bf01560665. 

Garm, C. et al. (2012), “Age and gender effects on DNA strand break repair in peripheral blood mononuclear cells”, Aging Cell, Vol.12/1, Blackwell Publishing Ltd, Oxford, https://doi.org/10.1111/acel.12019. 

Hamada, N. (2014), “What are the intracellular targets and intratissue target cells for radiation effects?”, Radiation research, Vol. 181/1, The Radiation Research Society, Indianapolis, https://doi.org/10.1667/RR13505.1. 

Herschleb, J. et al. (2007), “Pulsed-field gel electrophoresis.”, Nat Protoc. 2(3): 677-684. doi:10.1038/nprot.2007.94 

Iliakis, G. et al. (2015), “Alternative End-Joining Repair Pathways Are the Ultimate Backup for Abrogated Classical Non-Homologous End-Joining and Homologous Recombination Repair: Implications for the Formation of Chromosome Translocations.”, Mutation Research/Genetic Toxicology and Environmental Mutagenesis. 2(3): 677-84. doi: 10.1038/nprot.2007.94 

Jackson, S. (2002). “Sensing and repairing DNA double-strand breaks.”, Carcinogenesis. 23:687-696. Doi:10.1093/carcin/23.5.687. 

Ji, J. et al. (2017), “Phosphorylated fraction of H2AX as a measurement for DNA damage in cancer cells and potential applications of a novel assay.”, PLoS One. 12(2): e0171582. doi:10.1371/journal.pone.0171582 

Kawashima, Y.(2017), “Detection of DNA double-strand breaks by pulsed-field gel electrophoresis.”, Genes Cells 22:84-93. Doi: 10.1111/gtc.12457. 

Khoury, L. et al. (2013), “Validation of high-throughput genotoxicity assay screening using cH2AX in-cell Western assay on HepG2 cells.”, Environ Mol Mutagen, 54:737-746. Doi: 10.1002/em.21817. 

Khoury, L. et al. (2016), “Evaluation of four human cell lines with distinct biotransformation properties for genotoxic screening.”, Mutagenesis, 31:83-96. Doi: 10.1093/mutage/gev058

Kohn, K.W. (1991), “Principles and practice of DNA filter elution”, Pharmacology & Therapeutics, Vol.49(/1), Elsevier, Amsterdam, https://doi.org/10.1016/0163-7258(91)90022-E. 

Loo, DT. (2011), “In Situ Detection of Apoptosis by the TUNEL Assay: An Overview of Techniques. In: Didenko V, editor. DNA Damage Detection In Situ, Ex Vivo, and In Vivo. Totowa.”, NJ: Humana Press. p 3-13.doi: 10.1007/978-1-60327-409-8_1

Mah, L. J. et al. (2010), “Quantification of gammaH2AX foci in response to ionising radiation.”, J Vis Exp(38). doi:10.3791/1957. 

Nacci, D. et al. (1992), “Application of the DNA alkaline unwinding assay to detect DNA strand breaks in marine bivalves”, Marine Environmental Research, Vol.33(/2), Elsevier BV, Amsterdam, https://doi.org/10.1016/0141-1136(92)90134-8. 

Nikolova, T., F. et al. (2017), “Genotoxicity testing: Comparison of the γH2AX focus assay with the alkaline and neutral comet assays.”, Mutat Res 822:10-18. Doi: 10.1016/j.mrgentox.2017.07.004

Nitiss, J. L. et al. (2012), “Topoisomerase assays. ”, Curr Protoc Pharmacol. Chapter 3: Unit 3 3. 

OECD. (2014). Test No. 489: “In vivo mammalian alkaline comet assay.” OECD Guideline for the Testing of Chemicals, Section 4 . 

Olive, P. L., & Banáth, J. P. (2006), “The comet assay: a method to measure DNA damage in individual cells.”, Nature Protocols. 1(1): 23-29. doi:10.1038/nprot.2006.5. 

Platel A. et al. (2011), “Study of oxidative DNA damage in TK6 human lymphoblastoid cells by use of the thymidine kinase gene-mutation assay and the in vitro modified comet assay: Determination of No-Observed-Genotoxic-Effect-Levels.”, Mutat Res 726:151-159. Doi: 10.1016/j.mrgentox.2011.09.003. 

Raschke, S., J. Guan and G. Iliakis. (2009), “Application of alkaline sucrose gradient centrifugation in the analysis of DNA replication after DNA damage”, Methods in Molecular Biology, Vol.521, Humana Press, Totowa, https://doi.org/10.1007/978-1-60327-815-7_18. 

Redon, C. et al. (2010), “The use of gamma-H2AX as a biodosimeter for total-body radiation exposure in non-human primates.”, PLoS One. 5(11): e15544. doi:10.1371/journal.pone.0015544 

Revet, I. et al. (2011), “Functional relevance of the histone γH2Ax in the response to DNA damaging agents.” Proc Natl Acad Sci USA.108:8663-8667. Doi: 10.1073/pnas.1105866108 

Rogakou, E.P. et al. (1998), “DNA Double-stranded Breaks Induce Histone H2AX Phosphorylation on Serine 139.” , J Biol Chem, 273:5858-5868. Doi: 10.1074/jbc.273.10.5858 

Rothkamm, K. & Horn, S. (2009), “γ-H2AX as protein biomarker for radiation exposure.”, Ann Ist Super Sanità, 45(3): 265-71. 

White, R.R. and J. Vijg. (2016), “Do DNA Double-Strand Breaks Drive Aging?”, Molecular Cell, Vol.63, Elsevier, Amsterdam, http://doi.org/10.1016/j.molcel.2016.08.004. 

Yang, Y. et al. (1998), “The effect of catalase amplification on immortal lens epithelial cell lines”, Experimental Eye Research, Vol.67(/6), Academic Press Inc, Cambridge, https://doi.org/10.1006/exer.1998.0560.  

Zilio, N. and H. D. Ulrich (2021), “Exploring the SSBreakome: genome-wide mapping of DNA single-strand breaks by next-generation sequencing”, The FEBS journal, 288(13), Wiley, Hoboken, https://doi.org/10.1111/febs.15568 

 

List of Adverse Outcomes in this AOP

Event: 341: Impairment, Learning and memory

Short Name: Impairment, Learning and memory

Key Event Component

Process Object Action
learning decreased
memory decreased

AOPs Including This Key Event

AOP ID and Name Event Type
Aop:13 - Chronic binding of antagonist to N-methyl-D-aspartate receptors (NMDARs) during brain development induces impairment of learning and memory abilities AdverseOutcome
Aop:48 - Binding of agonists to ionotropic glutamate receptors in adult brain causes excitotoxicity that mediates neuronal cell death, contributing to learning and memory impairment. AdverseOutcome
Aop:54 - Inhibition of Na+/I- symporter (NIS) leads to learning and memory impairment AdverseOutcome
Aop:77 - Nicotinic acetylcholine receptor activation contributes to abnormal foraging and leads to colony death/failure 1 KeyEvent
Aop:78 - Nicotinic acetylcholine receptor activation contributes to abnormal role change within the worker bee caste leading to colony death failure 1 KeyEvent
Aop:87 - Nicotinic acetylcholine receptor activation contributes to abnormal foraging and leads to colony loss/failure KeyEvent
Aop:88 - Nicotinic acetylcholine receptor activation contributes to abnormal foraging and leads to colony loss/failure via abnormal role change within caste KeyEvent
Aop:89 - Nicotinic acetylcholine receptor activation followed by desensitization contributes to abnormal foraging and directly leads to colony loss/failure KeyEvent
Aop:90 - Nicotinic acetylcholine receptor activation contributes to abnormal roll change within the worker bee caste leading to colony loss/failure 2 KeyEvent
Aop:12 - Chronic binding of antagonist to N-methyl-D-aspartate receptors (NMDARs) during brain development leads to neurodegeneration with impairment in learning and memory in aging AdverseOutcome
Aop:99 - Histamine (H2) receptor antagonism leading to reduced survival KeyEvent
Aop:17 - Binding of electrophilic chemicals to SH(thiol)-group of proteins and /or to seleno-proteins involved in protection against oxidative stress during brain development leads to impairment of learning and memory AdverseOutcome
Aop:475 - Binding of chemicals to ionotropic glutamate receptors leads to impairment of learning and memory via loss of drebrin from dendritic spines of neurons AdverseOutcome
Aop:483 - Deposition of Energy Leading to Learning and Memory Impairment AdverseOutcome
Aop:490 - Co-activation of IP3R and RyR leads to reduced IQ through non-cholinergic mechanisms AdverseOutcome
Aop:499 - Activation of MEK-ERK1/2 leads to deficits in learning and cognition via disrupted neurotransmitter release AdverseOutcome
Aop:500 - Activation of MEK-ERK1/2 leads to deficits in learning and cognition via ROS and apoptosis AdverseOutcome
Aop:520 - Retinoic acid receptor agonism during neurodevelopment leading to impaired learning and memory AdverseOutcome
Aop:525 - Reduced oligodendrocyte differentiation during neurodevelopment leading to impaired learning and memory AdverseOutcome
Aop:533 - Retinoic acid receptor antagonism during neurodevelopment leading to impaired learning and memory AdverseOutcome
Aop:535 - Binding and activation of GPER leading to learning and memory impairments AdverseOutcome

Biological Context

Level of Biological Organization
Individual

Domain of Applicability

Taxonomic Applicability
Term Scientific Term Evidence Links
human Homo sapiens High NCBI
rat Rattus norvegicus High NCBI
fruit fly Drosophila melanogaster High NCBI
zebrafish Danio rerio High NCBI
gastropods Physa heterostropha High NCBI
mouse Mus musculus High NCBI
Life Stage Applicability
Life Stage Evidence
During brain development High
Adult, reproductively mature High
Sex Applicability
Sex Evidence
Mixed High

Basic forms of learning behavior such as habituation have been found in many taxa from worms to humans (Alexander, 1990). More complex cognitive processes such as executive function likely reside only in higher mammalian species such as non-human primates and humans. Recently, larval zebrafish has also been suggested as a model for the study of learning and memory (Roberts et al., 2013). 

Life stage applicability: This key event is applicable to various life stages such as during brain development and maturity (Hladik & Tapio, 2016). 

Sex applicability: This key event is not sex specific (Cekanaviciute et al., 2018), although sex-dependent cognitive outcomes have been recently ; Parihar et al., 2020). 

Evidence for perturbation by a prototypic stressor: Current literature provides ample evidence of impaired learning and memory being induced by ionizing radiation (Cekanaviciute et al., 2018; Hladik & Tapio, 2016). 

Key Event Description

 (Adapted from KE: 341 - in blue

Learning can be defined as the process by which new information is acquired to establish knowledge by systematic study or by trial and error (Ono, 2009). Two types of learning are considered in neurobehavioral studies: a) associative learning and b) non- associative learning. Associative learning is based on making associations between different events. In associative learning, a subject learns the relationship among two different stimuli or between the stimulus and the subject’s behavior. On the other hand, non-associative learning can be defined as an alteration in the behavioral response that occurs over time in response to a single type of stimulus. Habituation and sensitization are some examples of non-associative learning. 

The memory formation requires acquisition, retention and retrieval of information in the brain, which is characterized by the non- conscious recall of information (Ono, 2009). There are three main categories of memory, including sensory memory, short-term or working memory (up to a few hours) and long-term memory (up to several days or even much longer). 

Learning and memory depend upon the coordinated action of different brain regions and neurotransmitter systems constituting functionally integrated neural networks (D’Hooge and DeDeyn, 2001). Among the many brain areas engaged in the acquisition of, or retrieval of, a learned event, the hippocampal-based memory systems have received the most study. For example, the hippocampus has been shown to be critical for spatial-temporal memory, visio-spatial memory, verbal and narrative memory, and episodic and autobiographical memory (Burgess et al., 2000; Vorhees and Williams, 2014). However, there is substantial evidence that fundamental learning and memory functions are not mediated by the hippocampus alone but require a network that includes, in addition to the hippocampus, anterior thalamic nuclei, mammillary bodies cortex, cerebellum and basal ganglia (Aggleton and Brown, 1999; Doya, 2000; Mitchell et al., 2002, Toscano and Guilarte, 2005; Gilbert et al., 2006, 2016). Thus, damage to variety of 

 

brain structures can potentially lead to impairment of learning and memory. The main learning areas and pathways are similar in rodents and primates, including man (Eichenbaum, 2000; Stanton and Spear, 1990). While the prefrontal cortex and frontostriatal neural circuits have been identified as the primary sites of higher-order cognition in vertebrates, invertebrates utilize paired mushroom bodies, shown to contain ~300,000 neurons in honey bees (Menzel, 2012; Puig et al., 2014). 

For the purposes of this KE (AO), impaired learning and memory is defined as an organism’s inability to establish new associative or non-associative relationships, or sensory, short-term or long-term memories which can be measured using different behavioral tests described below. 

How it is Measured or Detected

In laboratory animals: in rodents, a variety of tests of learning and memory have been used to probe the integrity of hippocampal function. These include tests of spatial learning like the radial arm maze (RAM), the Barnes maze, Hebb-Williams maze, passive avoidance and Spontaneous alternation and most commonly, the Morris water maze (MWM). Test of novelty such as novel object recognition, and fear based context learning are also sensitive to hippocampal disruption. Finally, trace fear conditioning which incorporates a temporal component upon traditional amygdala-based fear learning engages the hippocampus. A brief description of these tasks follows. 

RAM, Barnes, MWM, Hebb-Williams maze are examples of spatial tasks, animals are required to learn the location of a food reward (RAM); an escape hole to enter a preferred dark tunnel from a brightly lit open field area (Barnes maze), or a hidden platform submerged below the surface of the water in a large tank of water (MWM) (Vorhees and Williams, 2014). The Hebb- Williams maze measures an animal’s problem solving abilities by providing no spatial cues to find the target (Pritchett & Mulder, 2004). 

Novel Object recognition. This is a simpler task that can be used to probe recognition memory. Two objects are presented to animal in an open field on trial 1, and these are explored. On trial 2, one object is replaced with a novel object and time spent interacting with the novel object is taken evidence of memory retention – I have seen one of these objects before, but not this one (Cohen and Stackman, 2015). 

Contextual Fear conditioning is a hippocampal based learning task in which animals are placed in a novel environment and allowed to explore for several minutes before delivery of an aversive stimulus, typically a mild foot shock. Upon reintroduction to this same environment in the future (typically 24-48 hours after original training), animals will limit their exploration, the context of this chamber being associated with an aversive event. The degree of suppression of activity after training is taken as evidence of retention, i.e., memory (Curzon et al., 2009). 

Trace fear conditioning. Standard fear conditioning paradigms require animals to make an association between a neutral conditioning stimulus (CS, a light or a tone) and an aversive stimulus (US, a footshock). The unconditioned response (CR) that is elicited upon delivery of the footshock US is freezing behavior. With repetition of CS/US delivery, the previously neutral stimulus comes to elicit the freezing response. This type of learning is dependent on the amygdala, a brain region associated with, but distinct from the hippocampus. Introducing a brief delay between presentation of the neutral CS and the aversive US, a trace period, requires the engagement of the amygdala and the hippocampus (Shors et al., 2001). 

Operant Responding. Performance on operant responding reflects the cortex’ ability to organize processes (Rabin et al., 2002). 

In humans: A variety of standardized learning and memory tests have been developed for human neuropsychological testing, including children (Rohlman et al., 2008). These include episodic autobiographical memory, perceptual motor tests, short and long term memory tests, working memory tasks, word pair recognition memory; object location recognition memory. Some have been incorporated in general tests of intelligence (IQ) such as the Wechsler Adult Intelligence Scale (WAIS) and the Wechsler. 

Modifications have been made and norms developed for incorporating of tests of learning and memory in children. Examples of some of these tests include: 

Rey Osterieth Complex Figure test (RCFT) which probes a variety of functions including as visuospatial abilities, memory, attention, planning, and working memory (Shin et al., 2006). 

Children’s Auditory Verbal Learning Test (CAVLT) is a free recall of presented word lists that yields measures of Immediate Memory Span, Level of Learning, Immediate Recall, Delayed Recall, Recognition Accuracy, and Total Intrusions. (Lezak 1994; Talley, 1986). 

Continuous Visual Memory Test (CVMT) measures visual learning and memory. It is a free recall of presented pictures/objects rather than words but that yields similar measures of Immediate Memory Span, Level of Learning, Immediate Recall, Delayed Recall, Recognition Accuracy, and Total Intrusions. (Lezak, 1984; 1994). 

Story Recall from Wechsler Memory Scale (WMS) Logical Memory Test Battery, a standardized neurospychological test designed to measure memory functions (Lezak, 1994; Talley, 1986). 

Autobiographical memory (AM) is the recollection of specific personal events in a multifaceted higher order cognitive process. It includes episodic memory- remembering of past events specific in time and place, in contrast to semantic autobiographical memory is the recollection of personal facts, traits, and general knowledge. Episodic AM is associated with greater activation of the hippocampus and a later and more gradual developmental trajectory. Absence of episodic memory in early life (infantile amnesia) is thought to reflect immature hippocampal function (Herold et al., 2015; Fivush, 2011). 

 

Staged Autobiographical Memory Task. In this version of the AM test, children participate in a staged event involving a tour of the hospital, perform a series of tasks (counting footprints in the hall, identifying objects in wall display, buy lunch, watched a video). It is designed to contain unique event happenings, place, time, visual/sensory/perceptual details. Four to five months later, interviews are conducted using Children’s Autobiographical Interview and scored according to standardized scheme (Willoughby et al., 2014). 

Attentional set-shifting (ATSET) task. Measures the ability to relearn cues over various schedules of reinforcement (Heisler et al., 2015). 

In Honey Bees: For over 50 years an assay for evaluating olfactory conditioning of the proboscis extension reflex (PER) has been used as a reliable method for evaluating appetitive learning and memory in honey bees (Guirfa and Sandoz, 2012; LaLone et al., 2017). These experiments pair a conditioned stimulus (e.g., an odor) with an unconditioned stimulus (e.g., sucrose) provided immediately afterward, which elicits the proboscis extension (Menzel, 2012). After conditioning, the odor alone will lead to the conditioned PER. This methodology has aided in the elucidation of five types of olfactory memory phases in honey bee, which include early short-term memory, late short-term memory, mid-term memory, early long-term memory, and late long-term memory (Guirfa and Sandoz, 2012). These phases are dependent on the type of conditioned stimulus, the intensity of the unconditioned stimulus, the number of conditioning trials, and the time between trials. Where formation of short-term memory occurs minutes after conditioning and decays within minutes, memory consolidation or stabilization of a memory trace after initial acquisition leads to 

mid-term memory, which lasts 1 d and is characterized by activity of the cAMP-dependent PKA (Guirfa and Sandoz, 2012). Multiple conditioning trials increase the duration of the memory after learning and coincide with increased Ca2+-calmodulin-dependent PKC activity (Guirfa and Sandoz, 2012). Early long-term memory, where a conditioned response can be evoked days to weeks after conditioning requires translation of existing mRNA, whereas late long-term memory requires de novo gene transcription and can last for weeks (Guirfa andSandoz, 2012)." 

Regulatory Significance of the AO

A prime example of impairments in learning and memory as the adverse outcome for regulatory action is developmental lead exposure and IQ function in children (Bellinger, 2012). Most methods are well established in the published literature and many have been engaged to evaluate the effects of developmental thyroid disruption. The US EPA and OECD Developmental Neurotoxicity (DNT) Guidelines (OCSPP 870.6300 or OECD TG 426) as well as OECD TG 443 (OECD, 2018) both require testing of learning and memory (USEPA, 1998; OECD, 2007) advising to use the following tests passive avoidance, delayed-matching-to-position for the adult rat and for the infant rat, olfactory conditioning, Morris water maze, Biel or Cincinnati maze, radial arm maze, T-maze, and acquisition and retention of schedule-controlled behavior. These DNT Guidelines have been deemed valid to identify developmental neurotoxicity and adverse neurodevelopmental outcomes (Makris et al., 2009). 

Also, in the frame of the OECD GD 43 (2008) on reproductive toxicity, learning and memory testing may have potential to be applied in the context of developmental neurotoxicity studies. However, many of the learning and memory tasks used in guideline studies may not readily detect subtle impairments in cognitive function associated with modest degrees of developmental thyroid disruption (Gilbert et al., 2012). 

 

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Appendix 2

List of Key Event Relationships in the AOP